CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig824 contig Ccv1_Contig824:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 72/153 (47.06%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEHER 460
            D S+ WKDLEW+R   K P++IKGIL  EDA  AV  G  GIIVSNHG RQLD   ++  A+  +  AVKG + +L D G+R G DV + LA GA  VL+GR  VY LAA G  GV  +++++  E  + M LTG  ++  I+R+ +  E ER
Sbjct:  229 DPSIGWKDLEWIREFWKGPMVIKGILDPEDARDAVRFGADGIIVSNHGGRQLDGVLSSARAMPAIADAVKGEMTLLADSGIRSGLDVVRMLAQGADGVLLGRAFVYALAAAGRAGVENLLDIIAKEMRVAMTLTGARAISDISRDSLVREIER 381          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 74/158 (46.84%), Postives = 100/158 (63.29%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHV-RTEHERIHSM 472
            D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  S+  I+ + + R   ER  ++
Sbjct:  229 DPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEISADALSRVTRERAETI 386          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GIIVSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA  VL+GR  +Y LA  G+ GV  ++++++ E  + M LTG  S+  IT
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVTFGADGIIVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRTGLDVVRMLALGADTVLLGRAFIYALAVAGQAGVSNLLDLIEKEMRVAMVLTGAKSIAEIT 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 69/156 (44.23%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEHERIHS 469
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  +++ I+R+ +    E + +
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKTIREISRDSLVQNAEALQT 384          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 451
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++ +  E
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQE 378          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.588e-33
Identity = 68/145 (46.90%), Postives = 99/145 (68.28%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+ WKDL+W+R   K P+++KG+L  EDA  A ++G  GI+VSNHG RQLD   ++  AL ++  AV  R+ +L DGGVR G DV + LALGA+ VL+GR  VY LAA+G  GV +++++++ E  + MALTG  ++  I R+
Sbjct:  229 DPSIQWKDLDWIRDQWKGPLILKGVLDPEDAKAAADIGADGIVVSNHGGRQLDGVLSSARALPDIAEAVGDRLTVLADGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARGGPGVSQLLDLIEKEMRVAMALTGVNTLDQIDRS 373          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  229 DPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  229 DPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 430
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  229 DPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373          
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANP28.588e-3347.06L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_XANC58.588e-3346.84L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_PSEMY8.588e-3349.65L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_KLEP38.588e-3344.23L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_ECOSM8.588e-3346.67L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_CAUSK8.588e-3346.90L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_XANCP1.122e-3251.05L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB1.122e-3251.05L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC81.122e-3251.05L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_SHISS1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]

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Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
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