CX300041

Overview
NameCX300041
Unique NameCX300041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSINEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
[Close]
BLAST of CX300041 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:    2 DASLSWKDLEWLRSITKLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRN 436
            D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQD 373
The following BLAST results are available for this feature:
BLAST of CX300041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SHIFL1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF81.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB31.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_ECOUT1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLC1.122e-3247.59L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC07005D07SK SaltLeaf1 Citrus clementina cDNA clone C07005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300041 ID=CX300041; Name=CX300041; organism=Citrus clementina; type=EST; length=559bp
GGATGCTTCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAA
AGTTACCAATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAA
GCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCG
ACAGTTAGATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTC
ATGCCGTTAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGA
GGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTGTACTTAT
TGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAATATGGGGTGA
GACGCGTCATTGAAATGCTGAAGGATGAGTTTGAGTTGACCATGGCCCTT
ACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGAGAACTGA
GCATGAGAGAATCCATTCGATGCTGTAATATTATTTTCTGTTGCAGAAAT
GTCTAAATGTATGGATGAATTAAACCATGAGCAATCATTTAAACTAATTA
AATTTGAAG
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