CX300045

Overview
NameCX300045
Unique NameCX300045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.244e-22
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 316
            YP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REIKE+ K
Sbjct:   14 YPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKK 117          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.614e-21
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS++F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+   +  KE+ K  K
Sbjct:   14 YPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEKKKADK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.108e-21
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+ K  K
Sbjct:   14 YPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.595e-21
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS++F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  KE+ K  K
Sbjct:   14 YPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEKKKADK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.695e-21
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+ +  K
Sbjct:   14 YPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKRAEK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.780e-20
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 316
            YPG G R+ R+D +V+ F N+KC+  F  +  P ++TWT +YR++HKK    E  KK+ R T K + R+I GA+L  I  +R +KPEVR A RE A++  KE+ K
Sbjct:   14 YPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRRTAK-FQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKK 117          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.855e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A RE A+++ KE+ K TK
Sbjct:   14 YPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQKKSTK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
The following BLAST results are available for this feature:
BLAST of CX300045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL24_DICDI7.244e-2247.6260S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_CANGA1.614e-2147.2260S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24A_YEAST2.108e-2147.2260S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_KLULA3.595e-2144.4460S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24B_YEAST4.695e-2146.3060S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_BRABE6.780e-2044.7660S ribosomal protein L24 OS=Branchiostoma belcher... [more]
RL24_PLUXY8.855e-2046.3060S ribosomal protein L24 OS=Plutella xylostella G... [more]
RL24_RAT1.510e-1945.3760S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE1.510e-1945.3760S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA1.510e-1945.3760S ribosomal protein L24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC07005D11SK SaltLeaf1 Citrus clementina cDNA clone C07005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300045 ID=CX300045; Name=CX300045; organism=Citrus clementina; type=EST; length=333bp
TTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATTCCCAGGTTTTCC
TCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCA
TCAAAGCTTACATGGACTTCCATGTACAGGAAACAACACAAGAAGGATAT
TGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATT
CAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAGAAAAGGAGGACT
GAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAAT
TAAGGAGAGGATCAAGAAGACCAAAGATGAAAA
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