CX300045

Overview
NameCX300045
Unique NameCX300045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.973e-19
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A R+ A++  KE+ K TK
Sbjct:   14 YPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQKKSTK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.576e-19
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVAKKRTRRAVK-FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.576e-19
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK-FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKES-KKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.365e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 319
            YPG+G  F+R DS++F F +SK    F  R  P ++ WT +YR++HKK I  E  KK+ R + K   R IVGA+L+VI+++R  +PE R+A R       KER +K
Sbjct:   14 YPGRGTLFVRGDSKIFRFYSSKTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEKRNARPETRNATRAKHAEAAKERKEK 118          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.365e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G R+ R D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVK-FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.740e-19
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G   ++ D + F F + KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A++  KE+ +  K
Sbjct:   14 YPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQKRAVK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.181e-18
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG G  + R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   14 YPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK-FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
The following BLAST results are available for this feature:
BLAST of CX300045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL24_HUMAN1.510e-1945.3760S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA1.510e-1945.3760S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN1.510e-1945.3760S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]
RL24_SPOFR1.973e-1945.3760S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_PAGMA2.576e-1945.3760S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]
RL24_GILMI2.576e-1945.3760S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_YARLI3.365e-1943.4060S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]
RL24_DANRE3.365e-1945.3760S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]
RL24_DROME5.740e-1942.5960S ribosomal protein L24 OS=Drosophila melanogast... [more]
RL24_ICTPU2.181e-1844.4460S ribosomal protein L24 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC07005D11SK SaltLeaf1 Citrus clementina cDNA clone C07005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300045 ID=CX300045; Name=CX300045; organism=Citrus clementina; type=EST; length=333bp
TTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATTCCCAGGTTTTCC
TCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCA
TCAAAGCTTACATGGACTTCCATGTACAGGAAACAACACAAGAAGGATAT
TGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATT
CAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAGAAAAGGAGGACT
GAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAAT
TAAGGAGAGGATCAAGAAGACCAAAGATGAAAA
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