CX300045

Overview
NameCX300045
Unique NameCX300045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.013e-15
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG G R IR D + F F N K +R  + +  P +++WT +YR+++KK ++ E  K +     K  +R I GA+L  I  +R +KPEVR A R+ A+R  KE+ K+ + E
Sbjct:   14 YPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAIRAAKEKQKQKELE 122          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-12
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI---AAEAVKKKRRSTKKPYSRSIVGATLEVIQK 241
            YPG GI F+R+DS+VF F  SKC + F  +  P K+ WT  YRK H K++    A AV   RR+    Y R+++  TL  +++
Sbjct:   14 YPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAV--KKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R  H KD+  +     +K+R+  + Y R++   TL  I+K    +      AREA  + I+ R+K  K +
Sbjct:   14 YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIR-----TAREA--KHIENRLKPNKQK 118          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328
            YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL+ + +      E+R   RE A  + + R  K KD
Sbjct:   14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIE----EIRQ-KRERAFYKNRMRGNKEKD 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 241
            YPGKGI F+R+DS+ F F  SKC + F  +  P KL WT  +RK   K++  ++      RR     Y+R +V  TLE ++K
Sbjct:   14 YPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQ--------------KRRTEKPEVRDAAREAALREIKERIKKTKD 328
            YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL+ +               K R +    RD  R+ AL E    + + ++
Sbjct:   14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQRRERAFYKNRMKGNNERDFLRDKALVESNPELLRLRE 138          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE--AVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328
            YPG G+ F+R+D +VF F  SKC + F  +  P K  WT  +RK   K++  +     +KRR+T   Y+R +   T+E ++K       V     +   R I  R+KK K+
Sbjct:   14 YPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK-------VESIKHKRQARFIMNRLKKGKE 117          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATL-------EVIQKR-------RTEKPEVRDAAREAALREIKERIKKTKD 328
            YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL       E+ QKR       R +    RD  R+  L E    + + ++
Sbjct:   14 YPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRMKGNSERDFLRDKKLVETNPELLRLRE 138          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328
            YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL    K  T   E+R   RE A  + + +    KD
Sbjct:   14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQ-KRERAFYKNRMKGNTEKD 119          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.813e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEA--VKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 319
            YPG G++F+R+D +VF F   KC + F  +  P K+ WT  YRK   K++A +     +KRR+    YSR      LE I KR TE  E R +        + ER++K
Sbjct:   14 YPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKRTS------HFVMERLRK 114          
The following BLAST results are available for this feature:
BLAST of CX300045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL24_SCHJA1.013e-1539.0960S ribosomal protein L24 OS=Schistosoma japonicum... [more]
RLP24_SCHPO1.048e-1240.96Ribosome biogenesis protein rlp24 OS=Schizosacchar... [more]
RLP24_ARATH6.796e-1233.93Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
RLP24_YEAST1.159e-1136.04Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]
RLP24_YARLI2.582e-1140.24Ribosome biogenesis protein RLP24 OS=Yarrowia lipo... [more]
RLP24_KLULA2.582e-1131.20Ribosome biogenesis protein RLP24 OS=Kluyveromyces... [more]
RLP24_DANRE2.582e-1133.33Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
RLP24_CANGA4.405e-1132.80Ribosome biogenesis protein RLP24 OS=Candida glabr... [more]
RLP24_ASHGO7.513e-1136.04Ribosome biogenesis protein RLP24 OS=Ashbya gossyp... [more]
RLP24_DROME9.813e-1137.04Probable ribosome biogenesis protein RLP24 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionC07005D11SK SaltLeaf1 Citrus clementina cDNA clone C07005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300045 ID=CX300045; Name=CX300045; organism=Citrus clementina; type=EST; length=333bp
TTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATTCCCAGGTTTTCC
TCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCA
TCAAAGCTTACATGGACTTCCATGTACAGGAAACAACACAAGAAGGATAT
TGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATT
CAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAGAAAAGGAGGACT
GAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAAT
TAAGGAGAGGATCAAGAAGACCAAAGATGAAAA
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