CX300045
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.013e-15 Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331 YPG G R IR D + F F N K +R + + P +++WT +YR+++KK ++ E K + K +R I GA+L I +R +KPEVR A R+ A+R KE+ K+ + E Sbjct: 14 YPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAIRAAKEKQKQKELE 122
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-12 Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI---AAEAVKKKRRSTKKPYSRSIVGATLEVIQK 241 YPG GI F+R+DS+VF F SKC + F + P K+ WT YRK H K++ A AV RR+ Y R+++ TL +++ Sbjct: 14 YPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12 Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAV--KKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331 YPG GI+F+R+D+++F F SKC + F + P K+ WT +R H KD+ + +K+R+ + Y R++ TL I+K + AREA + I+ R+K K + Sbjct: 14 YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIR-----TAREA--KHIENRLKPNKQK 118
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11 Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328 YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL+ + + E+R RE A + + R K KD Sbjct: 14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIE----EIRQ-KRERAFYKNRMRGNKEKD 119
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11 Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 241 YPGKGI F+R+DS+ F F SKC + F + P KL WT +RK K++ ++ RR Y+R +V TLE ++K Sbjct: 14 YPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11 Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQ--------------KRRTEKPEVRDAAREAALREIKERIKKTKD 328 YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL+ + K R + RD R+ AL E + + ++ Sbjct: 14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQRRERAFYKNRMKGNNERDFLRDKALVESNPELLRLRE 138
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11 Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE--AVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328 YPG G+ F+R+D +VF F SKC + F + P K WT +RK K++ + +KRR+T Y+R + T+E ++K V + R I R+KK K+ Sbjct: 14 YPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK-------VESIKHKRQARFIMNRLKKGKE 117
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATL-------EVIQKR-------RTEKPEVRDAAREAALREIKERIKKTKD 328 YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL E+ QKR R + RD R+ L E + + ++ Sbjct: 14 YPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRMKGNSERDFLRDKKLVETNPELLRLRE 138
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11 Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 328 YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL K T E+R RE A + + + KD Sbjct: 14 YPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQ-KRERAFYKNRMKGNTEKD 119
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.813e-11 Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 2 Query: 2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEA--VKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 319 YPG G++F+R+D +VF F KC + F + P K+ WT YRK K++A + +KRR+ YSR LE I KR TE E R + + ER++K Sbjct: 14 YPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKRTS------HFVMERLRK 114 The following BLAST results are available for this feature:
BLAST of CX300045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300045 ID=CX300045; Name=CX300045; organism=Citrus clementina; type=EST; length=333bpback to top |