CX300057

Overview
NameCX300057
Unique NameCX300057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11803 contig Ccv1_Contig11803:1106..1594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_MOUSE (Serine/threonine-protein kinase 4 OS=Mus musculus GN=Stk4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDNFMDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_MACMU (Serine/threonine-protein kinase 4 OS=Macaca mulatta GN=STK4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_COLGU (Serine/threonine-protein kinase 4 OS=Colobus guereza GN=STK4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_CERAE (Serine/threonine-protein kinase 4 OS=Cercopithecus aethiops GN=STK4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_BOVIN (Serine/threonine-protein kinase 4 OS=Bos taurus GN=STK4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDSFMDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_AOTNA (Serine/threonine-protein kinase 4 OS=Aotus nancymaae GN=STK4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP++    + A+F I  +   PT   P+  SD   DF++ CL ++P  R TA +LL HPFVK A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVKSA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_XENLA (Serine/threonine-protein kinase 4 OS=Xenopus laevis GN=stk4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP+++   + A+F I  S   PT   P+  S +  DFI LCL +NP  R +A +LL HPF+K A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYAEIHPMRAIFMI-PSNPPPTFRKPELWSKDFVDFINLCLVKNPELRSSATELLQHPFIKAA 284          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: Y9877_DICDI (Serine/threonine-protein kinase DDB_G0283821 OS=Dictyostelium discoideum GN=DDB_G0283821 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   25 AVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVK 258
            A DIWSLGCT+LEM T  PP+     + AMF + N+   P IP+++S + K F+  C  R+   RPTA +LL+HP++K
Sbjct:  190 ACDIWSLGCTLLEMLTGNPPYWDLGTMPAMFAMVNNPH-PPIPNNISADLKHFLLACFVRDINKRPTASQLLEHPWIK 266          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: DST4_DICDI (Serine/threonine-protein kinase dst4 OS=Dictyostelium discoideum GN=dst4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 KNSSGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPT--IPDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVK 258
            K S+G +   DIWSLG T +EMA +KPP      V  +F I   ++ PT  +P + S E  DFI +CL +    RP+AV LL+HPF+K
Sbjct:  193 KGSNGYDSKADIWSLGITAIEMAESKPPLFNLNPVKVIFVIP-FRQAPTLEVPGNWSPEFNDFISVCLNKEADKRPSAVDLLNHPFIK 279          
BLAST of CX300057 vs. ExPASy Swiss-Prot
Match: STK4_XENTR (Serine/threonine-protein kinase 4 OS=Xenopus tropicalis GN=stk4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   13 GCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTI--PDDLSDEGKDFIRLCLQRNPLNRPTAVKLLDHPFVKGA 264
            G N   DIWSLG T +EMA  KPP+++   + A+F I  S   PT   P+  S +  DFI LCL +NP  R +A +LL HPF+K A
Sbjct:  200 GYNCVADIWSLGITAIEMAEGKPPYAEIHPMRAIFMI-PSNPPPTFRKPELWSKDFVDFINLCLVKNPELRSSATELLQHPFIKTA 284          
The following BLAST results are available for this feature:
BLAST of CX300057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
STK4_MOUSE1.229e-1245.35Serine/threonine-protein kinase 4 OS=Mus musculus ... [more]
STK4_MACMU1.229e-1245.35Serine/threonine-protein kinase 4 OS=Macaca mulatt... [more]
STK4_COLGU1.229e-1245.35Serine/threonine-protein kinase 4 OS=Colobus guere... [more]
STK4_CERAE1.229e-1245.35Serine/threonine-protein kinase 4 OS=Cercopithecus... [more]
STK4_BOVIN1.229e-1245.35Serine/threonine-protein kinase 4 OS=Bos taurus GN... [more]
STK4_AOTNA1.229e-1245.35Serine/threonine-protein kinase 4 OS=Aotus nancyma... [more]
STK4_XENLA1.605e-1246.51Serine/threonine-protein kinase 4 OS=Xenopus laevi... [more]
Y9877_DICDI2.096e-1246.15Serine/threonine-protein kinase DDB_G0283821 OS=Di... [more]
DST4_DICDI2.096e-1244.32Serine/threonine-protein kinase dst4 OS=Dictyostel... [more]
STK4_XENTR2.737e-1246.51Serine/threonine-protein kinase 4 OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionC07005F02SK SaltLeaf1 Citrus clementina cDNA clone C07005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300057 ID=CX300057; Name=CX300057; organism=Citrus clementina; type=EST; length=489bp
AAGAACTCAAGTGGTTGCAATCTTGCTGTTGATATTTGGAGTCTTGGGTG
CACTGTTTTGGAAATGGCTACAACAAAACCACCTTGGAGCCAGTATGAAG
GGGTTGCTGCTATGTTTAAGATTGGGAATAGTAAGGAACTCCCAACAATT
CCAGATGACCTCTCTGATGAAGGAAAGGATTTTATTAGGTTGTGTTTGCA
ACGTAATCCCTTAAACCGTCCAACAGCAGTTAAGCTTTTGGATCACCCTT
TTGTGAAGGGTGCTGCACCTTTGGAAAGAACTATTTTGGCCCCTGAGCTG
AGTCGTTTGTGAACTCTACTCATCTTATTTTCAAATTCGTTTGGAGATCC
AAACGGAAGCTGTAGATGTTATTACACAACTCGTTTGTGTCGTCGTTTCA
TGTTTTGAAAATTTGAAAATAAGATGAGTAGTGTTCACGACAGCGTCGAG
ACCGTTTACGCCGCTGCAACTGCCATAGTTTCAGCTGAG
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