CX300060

Overview
NameCX300060
Unique NameCX300060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            S + C GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   48 SAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   57 CNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   54 CNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            S + C GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   42 SPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   51 CGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            S + C GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   50 SPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   51 CGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   51 CGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            S + C GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   50 SPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:   51 CGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CX300060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP_CICAR2.377e-1761.76Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_DAUCA4.055e-1760.32Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_PRUAV5.296e-1754.69Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP4_LENCU5.296e-1760.29Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP1_SOLLC6.917e-1762.50Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP6_LENCU9.034e-1760.29Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_SOLLC9.034e-1762.50Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_SOLPN9.034e-1762.50Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_LENCU1.180e-1658.82Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP2_TOBAC1.541e-1660.94Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionC07005F05SK SaltLeaf1 Citrus clementina cDNA clone C07005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300060 ID=CX300060; Name=CX300060; organism=Citrus clementina; type=EST; length=422bp
ATTCGCACGAGGGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGA
ACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGG
AACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAAT
GTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGG
GTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACT
GAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAAC
GAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGC
TTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATTA
ATTATAAAAAAAAAAAAAAAAA
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