CX300060

Overview
NameCX300060
Unique NameCX300060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            S + C GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   49 SPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C+GV+++  ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:   28 CTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   53 CSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   53 CSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GVR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC++VR
Sbjct:   50 CAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   57 CKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV++LN  A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   52 CAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   52 CAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   51 CGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   58 CTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
The following BLAST results are available for this feature:
BLAST of CX300060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP5_LENCU4.484e-1657.35Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_PHAAU5.856e-1655.56Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_ORYSJ5.856e-1661.90Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI5.856e-1661.90Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
SCA_LILLO1.305e-1554.69Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP6_GOSHI1.305e-1560.94Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_ARATH1.305e-1551.56Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH2.225e-1554.69Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_SOLPN2.225e-1559.38Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP3_PRUDU2.906e-1559.09Non-specific lipid-transfer protein 3 OS=Prunus du... [more]

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Properties
Property NameValue
Genbank descriptionC07005F05SK SaltLeaf1 Citrus clementina cDNA clone C07005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300060 ID=CX300060; Name=CX300060; organism=Citrus clementina; type=EST; length=422bp
ATTCGCACGAGGGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGA
ACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGG
AACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAAT
GTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGG
GTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACT
GAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAAC
GAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGC
TTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATTA
ATTATAAAAAAAAAAAAAAAAA
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