CX300060

Overview
NameCX300060
Unique NameCX300060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV+ L  AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   54 CAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   18 SGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:   31 SGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:   28 CNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   54 CSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.456e-15
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C GV+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   51 CGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:   28 CNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   55 CSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   55 CSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   55 CSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   55 CSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
The following BLAST results are available for this feature:
BLAST of CX300060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP3_LENCU3.796e-1556.25Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP_ELECO4.957e-1561.90Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_VITSX4.957e-1557.14Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP1_ARATH6.475e-1558.21Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP2_SOLCI8.456e-1559.38Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP5_VITSX1.104e-1455.56Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLT43_HORVU1.442e-1456.25Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.442e-1456.25Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT41_HORVU1.442e-1456.25Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPD_BRAOT1.884e-1459.38Non-specific lipid-transfer protein D OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionC07005F05SK SaltLeaf1 Citrus clementina cDNA clone C07005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300060 ID=CX300060; Name=CX300060; organism=Citrus clementina; type=EST; length=422bp
ATTCGCACGAGGGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGA
ACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGG
AACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAAT
GTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGG
GTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACT
GAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAAC
GAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGC
TTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATTA
ATTATAAAAAAAAAAAAAAAAA
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