CX300060

Overview
NameCX300060
Unique NameCX300060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            CSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   54 CSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.213e-14
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   54 CTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.213e-14
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   54 CTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   54 CTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C+ +
Sbjct:   54 CGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C+GVR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:   53 CNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC++V
Sbjct:   55 CSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            S E C+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:   50 SGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:   31 CAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:   31 CAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
The following BLAST results are available for this feature:
BLAST of CX300060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP3_BRANA1.884e-1459.38Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTPB_BRAOT3.213e-1457.81Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_BRANA3.213e-1457.81Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_BRANA4.197e-1457.81Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_BETVU7.158e-1452.38Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP_GERHY9.349e-1453.97Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_HORVU9.349e-1452.38Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP1_HORVU7.915e-1349.25Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP_AMACA1.763e-1250.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.763e-1250.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]

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Properties
Property NameValue
Genbank descriptionC07005F05SK SaltLeaf1 Citrus clementina cDNA clone C07005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300060 ID=CX300060; Name=CX300060; organism=Citrus clementina; type=EST; length=422bp
ATTCGCACGAGGGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGA
ACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGG
AACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAAT
GTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGG
GTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACT
GAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAAC
GAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGC
TTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATTA
ATTATAAAAAAAAAAAAAAAAA
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