CX300060

Overview
NameCX300060
Unique NameCX300060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300060_ssr257 microsatellite CX300060_ssr257:257..268. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:429..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   55 CSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   54 CNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   58 CSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            CSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   58 CSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCSRVR 206
            C+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C+ V+
Sbjct:   54 CTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   15 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            C GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   53 CVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CX300060 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 SHEGCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 203
            S + C GV++L+  AR+  DRQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DCSRV
Sbjct:   47 SGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
The following BLAST results are available for this feature:
BLAST of CX300060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP8_HORVU2.303e-1252.38Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP2_ARATH2.303e-1255.38Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP3_ORYSJ3.008e-1247.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI3.008e-1247.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPA_BRAOT3.928e-1250.00Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTPC_ARATH6.700e-1250.79Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_WHEAT3.325e-1146.27Non-specific lipid-transfer protein (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07005F05SK SaltLeaf1 Citrus clementina cDNA clone C07005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300060 ID=CX300060; Name=CX300060; organism=Citrus clementina; type=EST; length=422bp
ATTCGCACGAGGGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGA
ACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGG
AACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAAT
GTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGG
GTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACT
GAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAAC
GAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGC
TTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGATTA
ATTATAAAAAAAAAAAAAAAAA
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