CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFT (Iron-sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=erpA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFA (Iron-sulfur cluster insertion protein erpA OS=Xylella fastidiosa GN=erpA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XYLF2 (Iron--sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain M23) GN=erpA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_PHOLL (Iron-binding protein iscA OS=Photorhabdus luminescens subsp. laumondii GN=iscA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I LTE+A + ++   S R + + LR+GV+  GCSGM+Y +EF +  N   DD+V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISLTESAAQRVSSFLSHRGKGVGLRLGVRTSGCSGMAYLLEFADMIN--EDDTVFEDKGVKVIVDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: Y1857_AQUAE (Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  200 LTENALKHLNKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            +T+ A++ + K+  E + E+  LRI V  GGCSG  Y M F++       D V EYDG  +V DP S+ ++ G +LDY    +GGGF+ +NPNA
Sbjct:   12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDD--TVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNA 103          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ENTS8 (Iron-binding protein iscA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=iscA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L++ A   +N   + R +   LR+GV+  GCSGM+Y +EF +    +P+D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDTAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDAP--QPEDTVFEDKGVKVVVDGKSLQFLNGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_EDWI9 (Iron-binding protein iscA OS=Edwardsiella ictaluri (strain 93-146) GN=iscA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A K +    + R + L LR+GVK  GCSGM+Y +EF +  N   DD V E  G  ++ D KSL++L G +LD+    +  GF F NPN
Sbjct:    2 SITMSDSAAKRVQTFLTNRGKGLGLRLGVKTSGCSGMAYVLEFVDVLN--EDDVVFEDQGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALTY (Iron-binding protein iscA OS=Salmonella typhimurium GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALTI (Iron-binding protein iscA OS=Salmonella typhi GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALSV (Iron-binding protein iscA OS=Salmonella schwarzengrund (strain CVM19633) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERPA_XYLFT4.735e-1444.44Iron-sulfur cluster insertion protein erpA OS=Xyle... [more]
ERPA_XYLFA4.735e-1444.44Iron-sulfur cluster insertion protein erpA OS=Xyle... [more]
ERPA_XYLF24.735e-1444.44Iron--sulfur cluster insertion protein erpA OS=Xyl... [more]
ISCA_PHOLL8.077e-1440.00Iron-binding protein iscA OS=Photorhabdus luminesc... [more]
Y1857_AQUAE2.350e-1341.49Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=... [more]
ISCA_ENTS83.069e-1341.05Iron-binding protein iscA OS=Enterobacter sakazaki... [more]
ISCA_EDWI93.069e-1340.00Iron-binding protein iscA OS=Edwardsiella ictaluri... [more]
ISCA_SALTY4.009e-1341.05Iron-binding protein iscA OS=Salmonella typhimuriu... [more]
ISCA_SALTI4.009e-1341.05Iron-binding protein iscA OS=Salmonella typhi GN=i... [more]
ISCA_SALSV4.009e-1341.05Iron-binding protein iscA OS=Salmonella schwarzeng... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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