CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_PSEPK (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas putida (strain KT2440) GN=erpA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K  N +  E +E L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNA
Sbjct:   18 AQKVKNLVNEEGNERLKLRVFVTGGGCSGFQYGFTFDE--DVAEDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNA 104          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BUCAT (Iron--sulfur cluster insertion protein erpA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  185 KPAILLTENALKHL-NKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            K  +  TE A+K + N +  E++ DL LRI +  GGCSG  Y   F+   N   DD +I      ++ DP SL +L+G Q+DY + L G  F   NPNA
Sbjct:    6 KSHLQFTEKAIKKIKNLIEIEKNHDLKLRIYINGGGCSGFQYQFIFDTSINE--DDIIITQSEVSLIIDPISLQYLYGGQIDYLENLEGSKFIVSNPNA 102          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BUCA5 (Iron--sulfur cluster insertion protein erpA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  185 KPAILLTENALKHL-NKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            K  +  TE A+K + N +  E++ DL LRI +  GGCSG  Y   F+   N   DD +I      ++ DP SL +L+G Q+DY + L G  F   NPNA
Sbjct:    6 KSHLQFTEKAIKKIKNLIEIEKNHDLKLRIYINGGGCSGFQYQFIFDTSINE--DDIIITQSEVSLIIDPISLQYLYGGQIDYLENLEGSKFIVSNPNA 102          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_SODGM (Iron-sulfur cluster insertion protein erpA OS=Sodalis glossinidius (strain morsitans) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K  N +  E + +L LR+ +  GGCSG  Y   F+++ N   DD  IE  G  +V DP SL +L G  +DYS+ L G  F   NPNA
Sbjct:   16 ASKVKNLIADEENPNLKLRVYITGGGCSGFQYGFTFDDKVNE--DDFTIEKQGVALVVDPMSLQYLVGGSVDYSEGLEGSRFIVTNPNA 102          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_MANSM (Iron-sulfur cluster insertion protein erpA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T+   P       A K  N +  E ++DL LR+ +  GGCSG  Y   F+ + N    D  IE DG  +V DP SL +L G  +DY++ L G  F   NPNA
Sbjct:    2 TDMTIPLTFTDAAAKKVKNLIIEEENQDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDLTIENDGVKLVIDPMSLQYLIGGTVDYTEGLEGSRFVVHNPNA 101          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA2_METCA (Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            I  T++A + ++++ +E  + +L LR+ V  GGCSG  Y   F+   N   DD+V+E +G  ++ DP SL +L G ++DY++ + G  F  +NPNA
Sbjct:   25 IKFTDSAAQRVSELLAEEGDQNLKLRVYVTGGGCSGFQYGFTFDEVVNE--DDTVVEKNGVSVLVDPMSLQYLQGAEIDYTENVSGSQFVIRNPNA 118          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISAM2_ARATH (Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  200 LTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFK-NPNA 478
            L++N ++ + +++S   E   LR+GV+ GGCSG  Y  E +NR N  PDD V E +G  +V D  S   + G  +DY + LI   F    NP+A
Sbjct:   53 LSDNCIRRMKELQSSEPEKKMLRLGVETGGCSGFQYKFELDNRTN--PDDRVFEKNGVKLVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSA 144          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_PSEU2 (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A+  T NA   +  +  E   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNA
Sbjct:   10 ALEFTPNAAHKVKTLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNA 104          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_PSESM (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas syringae pv. tomato GN=erpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A+  T NA   +  +  E   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNA
Sbjct:   10 ALEFTPNAAHKVKTLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNA 104          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_PSEE4 (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas entomophila (strain L48) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A+  T  A   +  + SE   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNA
Sbjct:   10 ALEFTPGAAHKVKTLVSEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVAEDDTIVEREGVALVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNA 104          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERPA_PSEPK2.200e-1140.45Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ERPA_BUCAT2.200e-1139.39Iron--sulfur cluster insertion protein erpA OS=Buc... [more]
ERPA_BUCA52.200e-1139.39Iron--sulfur cluster insertion protein erpA OS=Buc... [more]
ERPA_SODGM2.873e-1141.57Iron-sulfur cluster insertion protein erpA OS=Soda... [more]
ERPA_MANSM2.873e-1138.24Iron-sulfur cluster insertion protein erpA OS=Mann... [more]
ERPA2_METCA2.873e-1136.46Iron-sulfur cluster insertion protein erpA 2 OS=Me... [more]
ISAM2_ARATH3.752e-1138.30Iron-sulfur assembly protein IscA-like 2, mitochon... [more]
ERPA_PSEU23.752e-1138.14Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ERPA_PSESM3.752e-1138.14Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ERPA_PSEE43.752e-1138.14Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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