CX300062 | Citrus Genome Database

Overview


Name	CX300062
Unique Name	CX300062
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	479

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALPK (Iron-binding protein iscA OS=Salmonella paratyphi A (strain AKU_12601) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALPC (Iron-binding protein iscA OS=Salmonella paratyphi C (strain RKS4594) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALPB (Iron-binding protein iscA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALPA (Iron-binding protein iscA OS=Salmonella paratyphi A GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALHS (Iron-binding protein iscA OS=Salmonella heidelberg (strain SL476) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALG2 (Iron-binding protein iscA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALEP (Iron-binding protein iscA OS=Salmonella enteritidis PT4 (strain P125109) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALDC (Iron-binding protein iscA OS=Salmonella dublin (strain CT_02021853) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALCH (Iron-binding protein iscA OS=Salmonella choleraesuis GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

[Close]

BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALAR (Iron-binding protein iscA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2

Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94

The following BLAST results are available for this feature:

BLAST of CX300062 vs. ExPASy Swiss-Prot

BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133


Match Name	E-value	Identity	Description
ISCA_SALPK	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPC	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPB	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPA	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALHS	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella heidelberg...	[more]
ISCA_SALG2	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella gallinarum...	[more]
ISCA_SALEP	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella enteritidi...	[more]
ISCA_SALDC	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella dublin (st...	[more]
ISCA_SALCH	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella choleraesu...	[more]
ISCA_SALAR	4.009e-13	41.05	Iron-binding protein iscA OS=Salmonella arizonae (...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA