CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4205 contig Ccv1_Contig4205:11..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALA4 (Iron-binding protein iscA OS=Salmonella agona (strain SL483) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SHISS (Iron-binding protein iscA OS=Shigella sonnei (strain Ss046) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SHIFL (Iron-binding protein iscA OS=Shigella flexneri GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SHIDS (Iron-binding protein iscA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SHIBS (Iron-binding protein iscA OS=Shigella boydii serotype 4 (strain Sb227) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ESCF3 (Iron-binding protein iscA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSM (Iron-binding protein iscA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSE (Iron-binding protein iscA OS=Escherichia coli (strain SE11) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLU (Iron-binding protein iscA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLI (Iron-binding protein iscA OS=Escherichia coli (strain K12) GN=iscA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCA_SALA44.009e-1341.05Iron-binding protein iscA OS=Salmonella agona (str... [more]
ISCA_SHISS5.236e-1341.05Iron-binding protein iscA OS=Shigella sonnei (stra... [more]
ISCA_SHIFL5.236e-1341.05Iron-binding protein iscA OS=Shigella flexneri GN=... [more]
ISCA_SHIDS5.236e-1341.05Iron-binding protein iscA OS=Shigella dysenteriae ... [more]
ISCA_SHIBS5.236e-1341.05Iron-binding protein iscA OS=Shigella boydii serot... [more]
ISCA_ESCF35.236e-1341.05Iron-binding protein iscA OS=Escherichia fergusoni... [more]
ISCA_ECOSM5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOSE5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOLU5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O17:... [more]
ISCA_ECOLI5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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