CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLC (Iron-binding protein iscA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL6 (Iron-binding protein iscA OS=Escherichia coli O6 GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL5 (Iron-binding protein iscA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOK1 (Iron-binding protein iscA OS=Escherichia coli O1:K1 / APEC GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECODH (Iron-binding protein iscA OS=Escherichia coli (strain K12 / DH10B) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECOBW (Iron-binding protein iscA OS=Escherichia coli (strain K12 / BW2952) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO8A (Iron-binding protein iscA OS=Escherichia coli O8 (strain IAI1) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO81 (Iron-binding protein iscA OS=Escherichia coli O81 (strain ED1a) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO7I (Iron-binding protein iscA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
[Close]
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO57 (Iron-binding protein iscA OS=Escherichia coli O157:H7 GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCA_ECOLC5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOL65.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O6 G... [more]
ISCA_ECOL55.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O6:K... [more]
ISCA_ECOK15.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O1:K... [more]
ISCA_ECODH5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOBW5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECO8A5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O8 (... [more]
ISCA_ECO815.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O81 ... [more]
ISCA_ECO7I5.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O7:K... [more]
ISCA_ECO575.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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