CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO55 (Iron-binding protein iscA OS=Escherichia coli (strain 55989 / EAEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO45 (Iron-binding protein iscA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ECO27 (Iron-binding protein iscA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP3 (Iron-binding protein iscA OS=Klebsiella pneumoniae (strain 342) GN=iscA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.838e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNSFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAA--EDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP7 (Iron-binding protein iscA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=iscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAA--EDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_STRMK (Iron--sulfur cluster insertion protein erpA OS=Stenotrophomonas maltophilia (strain K279a) GN=erpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  176 EELKPAILLTENALKHLNKM-RSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            + L+  +  TE+A   +  + + E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  ++  G  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   19 QSLERPLNFTESAAAKVKSLIQEEGNPDLALRVYIEGGGCSGFQYGFEFDENRAE---DDLAVQTSGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 118          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_XENNE (Iron-binding protein iscA OS=Xenorhabdus nematophilus GN=iscA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I LTE+A + +      R + + LR+GV+  GCSGM+Y +EF +  N   +D V E  G  ++ D KS+L+L G +LD+    +  GF F NPN
Sbjct:    2 SISLTESAAQRIVAFLDNRGKGVGLRLGVRTSGCSGMAYVLEFADVVN--EEDQVFEDKGVKVIVDGKSILYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SERP5 (Iron-binding protein iscA OS=Serratia proteamaculans (strain 568) GN=iscA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + +    + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KSL++L G +LD+    +  GF F NPN
Sbjct:    2 SITMSDSAAQRVQAFMNNRGKGLGLRLGVRTSGCSGMAYVLEFVDDMN--DDDIVFENKGVKVIIDGKSLVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_SALNS (Iron-binding protein iscA OS=Salmonella newport (strain SL254) GN=iscA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVNIFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPMA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_PECCP (Iron-binding protein iscA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=iscA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            +I L+E+A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N    D+V E  G  ++ D KSL++L G +LD+    +  GF F NPN+
Sbjct:    2 SISLSESAAQRVSAFIANRGKGLGLRLGVRTSGCSGMAYVLEFVDDLN--DGDTVFEDKGIKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNS 95          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCA_ECO555.236e-1341.05Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECO455.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O45:... [more]
ISCA_ECO275.236e-1341.05Iron-binding protein iscA OS=Escherichia coli O127... [more]
ISCA_KLEP36.838e-1341.05Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ISCA_KLEP78.930e-1341.05Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ERPA_STRMK8.930e-1337.86Iron--sulfur cluster insertion protein erpA OS=Ste... [more]
ISCA_XENNE1.166e-1238.95Iron-binding protein iscA OS=Xenorhabdus nematophi... [more]
ISCA_SERP51.166e-1237.89Iron-binding protein iscA OS=Serratia proteamacula... [more]
ISCA_SALNS1.166e-1241.05Iron-binding protein iscA OS=Salmonella newport (s... [more]
ISCA_PECCP1.166e-1238.54Iron-binding protein iscA OS=Pectobacterium caroto... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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