CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  185 KPAILLTENALKHLNKMRSERSEDLC--LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            K    +T++ALK + ++ +++  D C  LR+G+K+ GCSGMSYT++F  + N + D++V+      I+ D K+LL + G ++DY +  I   F F NPNA
Sbjct:   15 KAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKN-KFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNA 113          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANC5 (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=erpA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANAC (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas axonopodis pv. citri GN=erpA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANOR (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas oryzae pv. oryzae GN=erpA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVVTDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANOM (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=erpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVVTDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_STRM5 (Iron--sulfur cluster insertion protein erpA OS=Stenotrophomonas maltophilia (strain R551-3) GN=erpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  176 EELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            + L+  +  TE+A   +  +  E    DL LR+ ++ GGCSG  Y  EF ENRA    DD  ++  G  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   19 QSLERPLNFTESAAAKVKSLIQEEGNLDLALRVYIEGGGCSGFQYGFEFDENRAE---DDLAVQTSGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 118          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPY (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPS (Iron-binding protein iscA OS=Yersinia pseudotuberculosis GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPP (Iron-binding protein iscA OS=Yersinia pestis (strain Pestoides F) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPN (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCA1_DICDI1.166e-1238.00Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ERPA_XANC51.166e-1242.22Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANAC1.166e-1242.22Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANOR1.523e-1242.22Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANOM1.523e-1242.22Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_STRM51.523e-1237.86Iron--sulfur cluster insertion protein erpA OS=Ste... [more]
ISCA_YERPY1.989e-1236.84Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPS1.989e-1236.84Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPP1.989e-1236.84Iron-binding protein iscA OS=Yersinia pestis (stra... [more]
ISCA_YERPN1.989e-1236.84Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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