CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPG (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPE (Iron-binding protein iscA OS=Yersinia pestis GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPB (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERPA (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERP3 (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ERWCT (Iron-binding protein iscA OS=Erwinia carotovora subsp. atroseptica GN=iscA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+E+A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N    D+V E  G  ++ D KSL++L G +LD+    +  GF F NPN
Sbjct:    2 SISLSESAAQRVSAFIANRGKGLGLRLGVRTSGCSGMAYVLEFVDDLN--DGDTVFEDKGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_SHEDO (Iron-sulfur cluster insertion protein erpA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=erpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T+   P       A+K    +  E++ +L LR+ V  GGCSG  Y   F+ +++A  DD VIE  G  +V DP SL +L G ++DY+  L G  F  KNPNA
Sbjct:    5 TDAAMPIKFTDAAAIKVKGLLEEEQNPELKLRVYVTGGGCSGFQYGFTFDEKSSA--DDFVIEKQGVKLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNA 104          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_YERE8 (Iron-binding protein iscA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=iscA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.598e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISISDSAAQRVSAFLNNRGKGLGLRLGVRTSGCSGMAYILEFVDEMN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANCP (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANCB (Iron--sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris (strain B100) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCA_YERPG1.989e-1236.84Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPE1.989e-1236.84Iron-binding protein iscA OS=Yersinia pestis GN=is... [more]
ISCA_YERPB1.989e-1236.84Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPA1.989e-1236.84Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERP31.989e-1236.84Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_ERWCT1.989e-1238.95Iron-binding protein iscA OS=Erwinia carotovora su... [more]
ERPA_SHEDO1.989e-1239.22Iron-sulfur cluster insertion protein erpA OS=Shew... [more]
ISCA_YERE82.598e-1236.84Iron-binding protein iscA OS=Yersinia enterocoliti... [more]
ERPA_XANCP3.394e-1241.11Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANCB3.394e-1241.11Iron--sulfur cluster insertion protein erpA OS=Xan... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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