CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XANC8 (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_ENT38 (Iron-binding protein iscA OS=Enterobacter sp. (strain 638) GN=iscA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I L+++A   ++     R +   LR+GV+  GCSGM+Y +EF +      DD+V E  G  +V D KSL FL G QLD+    +  GF F NPN
Sbjct:    2 SITLSDSAAARVSSFLENRGKGYGLRLGVRTSGCSGMAYVLEFVDEPAT--DDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_THIDA (Putative iron-sulfur cluster insertion protein erpA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E++  ++ T++A   +  +  E    DL LR+ V  GGCSG  Y   F+   NA  DD+V+  +G  ++ D  S  +L G ++DYS+ L G  F  KNPNA
Sbjct:    4 TTEMESPLVFTDSAASKVKSLIDEEGNPDLKLRVFVSGGGCSGFQYGFTFDEAQNA--DDTVMVKNGVTLLVDSMSFQYLVGAEIDYSEGLEGAQFVIKNPNA 104          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_ACIF5 (Iron--sulfur cluster insertion protein erpA OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  176 EELKPAILLTENAL-KHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            + + P + LT+NA  K  + +  E S+DL LR+ V  GGCSG  Y   F+   N    D+ +   G  ++ DP S  +L G ++DYS+ L G  F  KNPNA
Sbjct:   13 DSIPPVMTLTQNAADKIASLIEEEGSDDLKLRVFVTGGGCSGFQYGFTFDENMNE--GDTEVHQLGVSLLIDPMSYQYLVGAEIDYSEGLEGAQFVIKNPNA 112          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_ACIF2 (Iron--sulfur cluster insertion protein erpA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  176 EELKPAILLTENAL-KHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            + + P + LT+NA  K  + +  E S+DL LR+ V  GGCSG  Y   F+   N    D+ +   G  ++ DP S  +L G ++DYS+ L G  F  KNPNA
Sbjct:   13 DSIPPVMTLTQNAADKIASLIEEEGSDDLKLRVFVTGGGCSGFQYGFTFDENMNE--GDTEVHQLGVSLLIDPMSYQYLVGAEIDYSEGLEGAQFVIKNPNA 112          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_PROMH (Iron-binding protein iscA OS=Proteus mirabilis (strain HI4320) GN=iscA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  191 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +I LTE A   +    + R +   LR+GV+  GCSGM+Y +EF +  N   +D+V E  G  ++ D KS+++L G +LD+    +  GF F NPN
Sbjct:    2 SISLTEAAANRVRSFLANRGKGEGLRLGVRTSGCSGMAYVLEFADVIN--DEDTVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPN 94          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_HAHCH (Iron-sulfur cluster insertion protein erpA OS=Hahella chejuensis (strain KCTC 2396) GN=erpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E  P I     A K  + +  E +++L LR+ V  GGCSG  Y   F+   N   DD+++E DG  +V D  S  +L G ++D+ + L G  F  KNPNA
Sbjct:    6 TYEPTPIIFTDNAAAKVKSLIEDEGNDELSLRVFVTGGGCSGFQYGFSFDEAVN--EDDTIVEKDGVRLVVDSLSYQYLVGAEVDFREGLEGAQFVIKNPNA 105          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_ALHEH (Iron-sulfur cluster insertion protein erpA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=erpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            TE+ +  ++    A +    +  E S+DL LR+ V  GGCSG  Y   F+ R      DSV+E DG   + DP S  +L G ++D+ + + G  F  +NPNA
Sbjct:   11 TEDFQALVVTDSAAARVAQLIAQEESDDLKLRVFVSGGGCSGFQYGFTFDERIEE--GDSVVEKDGVTFLVDPMSSQYLMGAEIDFVEGIEGEQFVIRNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii GN=RP484 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  182 LKPAILLTENALKHLNKMRSERSEDLC-LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            +K  I LT+ A K +  +  +R++    +R+G+K GGC+G +Y +E+ +  N    D V+E  G  I+ DPK+L+++ G ++DY +      F+F NPN
Sbjct:    1 MKNVISLTDAAAKQVKLLIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQF--DEVVEEKGVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPN 97          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_CHRVO (Putative iron-sulfur cluster insertion protein erpA OS=Chromobacterium violaceum GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  179 ELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            E+   I  TE+A   +  + +E    DL LR+ V  GGCSG  Y   F+  AN   DD+ IE  G   + DP S  +L G ++DY ++L G  F  +NPNA
Sbjct:    7 EMPSPINFTESACAKVQDLIAEEGNPDLKLRVFVTGGGCSGFQYGFTFDEIANE--DDTAIERQGVTFLVDPMSYQYLVGAEIDYQESLEGSQFVIRNPNA 105          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERPA_XANC83.394e-1241.11Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ISCA_ENT384.432e-1240.00Iron-binding protein iscA OS=Enterobacter sp. (str... [more]
ERPA_THIDA4.432e-1236.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_ACIF55.789e-1238.24Iron--sulfur cluster insertion protein erpA OS=Aci... [more]
ERPA_ACIF25.789e-1238.24Iron--sulfur cluster insertion protein erpA OS=Aci... [more]
ISCA_PROMH7.560e-1237.89Iron-binding protein iscA OS=Proteus mirabilis (st... [more]
ERPA_HAHCH7.560e-1237.25Iron-sulfur cluster insertion protein erpA OS=Hahe... [more]
ERPA_ALHEH7.560e-1235.29Iron-sulfur cluster insertion protein erpA OS=Alka... [more]
Y484_RICPR1.684e-1134.34Uncharacterized protein RP484 OS=Rickettsia prowaz... [more]
ERPA_CHRVO1.684e-1138.61Putative iron-sulfur cluster insertion protein erp... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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