CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURTA (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURPS (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURP6 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 668) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURP1 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 1710b) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURP0 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 1106a) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURMS (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain SAVP1) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURMA (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURM9 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain NCTC 10229) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_BURM7 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain NCTC 10247) GN=erpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNA
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNA 110          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISA1_SCHPO (Iron sulfur assembly protein 1 OS=Schizosaccharomyces pombe GN=isa1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  185 KPAILLTENALKHLNKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPD--DSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            K  I LT  A++HL KM+S  S +   LRIGVKQ GC+G +Y++E+  +    PD  D +++ DG  I+   ++LL + G  +DY D  +   F F NPN
Sbjct:   80 KNVIKLTPLAVEHLKKMQSSASMKGKMLRIGVKQKGCAGQAYSLEYIEK----PDKFDEIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPN 175          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERPA_BURTA1.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURPS1.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURP61.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURP11.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURP01.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURMS1.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURMA1.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURM91.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURM71.684e-1136.89Putative iron-sulfur cluster insertion protein erp... [more]
ISA1_SCHPO2.200e-1140.00Iron sulfur assembly protein 1 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
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