CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            D+  ++  +  V+  V+ +G++D++ NNA    E+   I + D+   E V   N+   F  T+HA + MK     SII+T SV    G  +   YT++K  +V   +  A++L   GIRVN V+P  + TPL
Sbjct:  101 DLGFDENCKRVVDEVVNAFGRIDVLINNAAEQYESS-TIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGS--SIINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPL 229          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_MYCS2 (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium smegmatis GN=fabG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            V CDVT    ++ A        G ++++  NAGI  +A   ++   +  FE V++ NL G F   + A+R M+    G II   SV G+ G      Y ++K G++G+ ++ + EL + G+  N V+P  + T + +
Sbjct:   66 VQCDVTDSAAVDRAFKEVEEHQGPVEVLVANAGISKDA--FLMRMTEERFEEVINTNLTGAFRCAQRASRTMQRKRFGRIIFIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELAKAGVTANVVAPGYIDTEMTR 200          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V  ++  E+ I  A     +    +DI+ NNAGI  +     L     ++E VL VNL G FL T+++ R M     G I++ +SV G  G V    Y+++K G++G  K+ A EL    + VN V+P  + T +
Sbjct:   62 VEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKL--FLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDM 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            C V K ++ E  V TAV  +G +DI+ +NA  V+    +I+D  +  ++  L +N+    L TK     M+  G GS++  +S+           Y  SK  ++GL K  A+EL    IRVNC++P ++ T  ++
Sbjct:   70 CHVGKAEDRERLVATAVKLHGGIDILVSNAA-VNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR 203          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS-IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V  D+    E   A+   + + G++D++ NNAG + +A    LD    E+  + +V++ G FL ++ AAR M   G+G  II+  SV        + AYT++KH + GL K  A+EL R  I VN V+P  +ATP+
Sbjct:   57 VQLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAP--FLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPM 190          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            C++T  +E  N V    +Q  KLDI+  NAGI  +     + N+  +F+ V+ +NL   F+  + A + M     G II+  S+ GV G      Y +SK G++G+ K+ A E+   GI VN V+P
Sbjct:   59 CNLTNTEECSNLV----AQIEKLDILVCNAGITKDTLAIRMKNE--DFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAP 178          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 43/135 (31.85%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAAR-VMKPAGRGSIISTASV--CGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DVT E ++ N V +A+ ++GKLD+M NNAG+ +    +  +   +++  V+  NL G FLG++ A +  ++   +G++I+ +SV    +   +  H Y +SK G+  + +  A+E    GIRVN + P  + TP+
Sbjct:   66 DVTVESDVINLVQSAIKEFGKLDVMINNAGMENPVSSH--EMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEWKIPWPLFVH-YAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 197          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  123 KEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPY 485
            K+ E  +   + +YG +DI+ NNAGI+ +   +     + E++ V  V+L+G F  ++ A         G II+  S  G+ G      Y+SSK G++GL K  A+E  +  I+VN V+P+
Sbjct:  380 KDSEAIIKNVIDKYGTIDILVNNAGILRD--RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH 498          

HSP 2 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   39 GESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            G S   D+       NG   V  D     + +  V TAV  +G + ++ NNAGI+ +A  ++    + +++LV+ V+L G F  TK A    +    G I++T+S  G+ G      Y S+K  ++G  +  A E  ++ I+ N ++P
Sbjct:   49 GNSKAADVVVDEIVKNGGVAV-ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDA--SMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAP 193          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            C V K ++ E  V TAV  +G +DI+ +NA  V+    +++D  +  ++  L +N+    L TK     M+  G GS++  +S+           Y  SK  ++GL K  A+EL    IRVNC++P ++ T  ++
Sbjct:   70 CHVGKAEDRERLVATAVKLHGGIDILVSNAA-VNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR 203          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHMA_FLAS1 (N-acylmannosamine 1-dehydrogenase OS=Flavobacterium sp. (strain 141-8) PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 3
Query:   87 GCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS------IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            G   + CD+     I+ A+  AV++ G LDI+    G +     N LD   A+++  + VN+ G FL  +  AR M  AG G       II+  SV   +    + AY ++K GV  L +  AV+L R GI VN ++P
Sbjct:   60 GAIPIACDLADRAAIDAAMADAVARLGGLDILVAG-GALKGGTGNFLDLSDADWDRYVDVNMTGTFLTCRAGARAMVAAGAGKDGRSARIITIGSVNSFMAEPEAAAYVAAKGGVAMLTRAMAVDLARHGILVNMIAP 196          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
GRDH1_ARATH9.373e-1232.58Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
FABG_MYCS29.373e-1229.203-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_AQUAE9.373e-1232.593-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
DHRS4_HUMAN9.373e-1231.11Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
YOHF_ECOLI1.224e-1135.29Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
FABG_RICBR1.224e-1134.133-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHGB_BACME1.224e-1131.85Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
FOX2_CANTR1.599e-1132.23Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
DHRS4_PONAB1.599e-1130.37Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHMA_FLAS11.599e-1133.33N-acylmannosamine 1-dehydrogenase OS=Flavobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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