CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 3
Query:   90 CSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            C  +  DV  E   E AV   V  +GKLDI+ NNA      + +IL+    + E     N+  +F  TK A   ++     +II+T S+    G  A   Y+S+K  +V   ++ A  L   GIRVN V+P  + TPL
Sbjct:   97 CLLIPGDVGDENHCEQAVQQTVDHFGKLDILVNNAA-EQHPQDSILNISTEQLEKTFRTNIFSMFHMTKKALPHLQEGC--AIINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSLADKGIRVNAVAPGPIWTPL 231          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 41/135 (30.37%), Postives = 69/135 (51.11%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            DVT ++E+   V     ++G++DI+ N+AG++  +   I + D   +E ++ VN+ G           M     G II+ AS+ G      S  Y++SK  V  + +    EL + G+RV  +SP +V TPL+ D
Sbjct:   64 DVTHKEEVTELVEKTKEKFGQIDILVNSAGLMLSSA--ITEGDVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISGFEVTKKSTLYSASKAAVHSITQGLEKELAKTGVRVTSISPGMVDTPLSGD 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DV +  ++    +TA   +G L I+ NNAG+ D     +      E++ +  VN  G FL ++ AA+ +   G G II+ +S    +      AYT+SK  V  + +  A EL    I  NCV+P  VAT +
Sbjct:   85 DVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDM 216          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: Y2567_STAAR (Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2567 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKDF 515
            V  DVTK++E++  +  A   +G LDI+ N+AG +  +K  I D    E++ ++ VN+ G     K A   M     G +I+ AS+ G     +S  Y+++K  V  + +    EL + G++V  +SP +V T +   +
Sbjct:   58 VPTDVTKKEEVDELIKMAQQTFGGLDIVINSAGQMLSSK--ITDYQVDEWDSMIDVNIKGTLYTAKAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITATY 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            +++   E++     A +    +DI+ NNAGI  +     +    A+++ VL VNL  VF  T+     M     G II+  SV GV G      Y +SK G++G  K+ A E+    I VNCV+P
Sbjct:   60 NLSNRDEVKALGQKAEADLEGVDILVNNAGITKDGL--FVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAP 182          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            DVT +  + + V       G +DI+ NNAGI   A   + +  + +++ ++S N+  VF   +  AR M P GRG I++  SV   +       YT++K  V  L K  A + GR G+++N ++P   AT + +
Sbjct:   68 DVTDQDAVIDGVAAIERDMGPIDILINNAGIQRRAP--LEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTE 199          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
YHDF_BACSU4.652e-1133.33Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
Y0419_STAS14.652e-1130.37Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
SDR1_PICAB4.652e-1131.82Short-chain type dehydrogenase/reductase OS=Picea ... [more]
Y2567_STAAR6.075e-1129.50Uncharacterized oxidoreductase SAR2567 OS=Staphylo... [more]
NODG_RHIS36.075e-1132.80Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
GNO_GLUOX7.935e-1130.60Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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