CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCD2_BOVIN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 59/174 (33.91%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   12 LIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQA----EFELVLSVNLVGVFLGTKHAARVM------KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            ++ D+ +  GE+  K +G        C++   DVT EK+++ A+  A  ++G++D+  N AGI   +K   L   QA    +F+ V++VNL+G F   +  A  M      +   RG II+TASV    G V   AY++SK G+VG+    A +L   GIRV  ++P +  TPL
Sbjct:   38 VLLDLPNSDGETQAKKLG------KSCAFAPADVTSEKDVQAALTLAREKFGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVMTIAPGLFGTPL 205          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.131e-18
Identity = 48/132 (36.36%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DV+KE +++  + TAV  +G +D++ NNAGI  +    ++   +++++ V+ +NL GVFL T+ A ++M    +G II+ ASV G+IG +    Y ++K GV+G  K AA E     I VN V P  +A+ +
Sbjct:  143 DVSKEADVDAMMKTAVDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM 272          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.131e-18
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            D+T    +  AV T   +YG+LD+M NNAGI   +  + +  +  +F+ ++ +N+ GVF G   A + MK A +G II+TASV G+ G ++   Y +SK GV+GL      E+ R  IRV  V+P VV T + K
Sbjct:   65 DLTSRDAVMAAVGTVAQKYGRLDVMINNAGITMNSVFSRVSEE--DFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTK 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCD2_HUMAN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.702e-18
Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 3
Query:   12 LIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQA----EFELVLSVNLVGVFLGTKHAARVM------KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            ++ D+ +  GE+  K +G      N C +   DVT EK+++ A+  A  ++G++D+  N AGI   +K   L   Q     +F+ VL VNL+G F   +  A  M      +   RG II+TASV    G V   AY++SK G+VG+    A +L   GIRV  ++P +  TPL
Sbjct:   38 VLLDLPNSGGEAQAKKLG------NNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 205          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 8.752e-18
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAE-FELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            V  DV  E ++  A+   + Q+G +D++ NNAGI   ++  +L     E F+ V++VN+ G+FLG +     M   G G I++ ASV  ++      AYT+SK  V+ L K+ AV+    GIR N V P ++ TP+ +
Sbjct:   57 VRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQ 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.143e-17
Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 3
Query:   12 LIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQA----EFELVLSVNLVGVFLGTKHAARVM------KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            ++ D+ +  GE+  K +G        C +   +VT EKE++ A+  A  ++G++D+  N AGI    K      +Q     +F+ V++VNL+G F   +  A VM      +   RG II+TASV    G V   AY++SK G+VG+    A +L   GIRV  ++P + ATPL
Sbjct:   38 VLLDVPNSEGETEAKKLG------GNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFATPL 205          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +VT   +I+  V   V +YG++D++ NNAGI  +A   ++   + +++ V++VNL GVF  T+     M     GSI++ +SV G+ G      Y +SK GV+G+ K  A EL    IRVN V+P  + TP+ +
Sbjct:   62 NVTDRDQIKEVVEKVVQKYGRIDVLVNNAGITRDAL--LVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTE 193          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            +V I DI ++ G+   + I      A   +++  DV K+ E    V   V  +G+LDI+ NNAGIV     NI +  + +F+  ++VN+ G FL +K+A   MK  G G I++ +S  G+IG      Y+ SK  ++GL ++ AV+   +GIRVN V P
Sbjct:   31 KVAINDISEEKGKETVELIKSMGGEA---AFIFGDVAKDAE--QIVKKTVETFGRLDILVNNAGIVPYG--NIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCP 182          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDN-DQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            D+T    +  AV     +YG+LD+M NNAGI     +N+     + EF+ ++ +N+ GVF G   A + MK A +G II+TASV G+ G ++   Y +SK  V+GL      E+ R  IRV  V+P VV T +
Sbjct:   65 DLTSRDAVMAAVGQVAQKYGRLDVMINNAGITS---NNVFSRVSEEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDM 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.409e-17
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            V  +V    E++  + T + ++ ++D++ NNAGI  +    +L     +++ V+ +NL GVFL TK  +++M     G II+  SV G++G      Y+++K GV+G  K  A EL   G+ VN V+P  +AT + ++
Sbjct:   61 VQANVANADEVDQLIKTTLDKFSRIDVLVNNAGITRDTL--LLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTEN 196          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
HCD2_BOVIN3.929e-1833.913-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taur... [more]
FABG2_BRANA5.131e-1836.363-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
BAIA1_EUBSP5.131e-1838.81Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
HCD2_HUMAN6.702e-1834.483-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sap... [more]
HCDR_XANP28.752e-1834.782-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
HCD2_RAT1.143e-1733.913-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
FABG_THEMA2.547e-1735.823-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
Y325_THEMA3.326e-1735.22Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
BAIA2_EUBSP5.673e-1738.35Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
FABG1_SYNY37.409e-1731.883-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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