CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300068_ssr69 microsatellite CX300068_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5835 contig Ccv1_Contig5835:156..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCD2_MOUSE (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musculus GN=Hsd17b10 PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:   12 LIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIV------DEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVM------KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            ++ D+ D  GES  K +G        C +   +VT EKEI+ A+  A  ++G++D+  N AGI        + K+ I  +   +F+ V++VNL+G F   +  A  M      +   RG II+TASV    G V   AY++SK G+ G+    A +L   GIRV  ++P + ATPL
Sbjct:   38 VLLDVPDSEGESQAKKLG------ESCIFAPANVTSEKEIQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHQKKNKI--HTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIDGMTLPIARDLAPTGIRVVTIAPGLFATPL 205          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DV+KE +++  + TAV ++G +D++ NNAG        ++   +++++ V+ +NL GVFL ++ A ++M    +G II+ ASV G+IG +    Y ++K GV+G  K AA E     I VN V P  +A+ +
Sbjct:   72 DVSKEADVDAMMKTAVDKWGTIDVVVNNAGDT-----LLIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM 198          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.156e-16
Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVAT----PLAKD 512
            V  DV+  ++++N +   +S +  +DI+ NNAGI  +  + I+   + E++ V+++NL GVF  TK   R M     G II+ +S+ GV G      Y ++K GV+GL K++A EL    I VN ++P  ++T     LAKD
Sbjct:   59 VKADVSNPEDVQNMIKETLSVFSTIDILVNNAGITRD--NLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKLAKD 198          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 56/166 (33.73%), Postives = 85/166 (51.20%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            RV+I DI  D  E     I      A      H DV+ E  ++   +      G +DI+FNNAG VD+    + +     F+ +++V+L G FL +K+   +M   G GSII+T+S+ G    +    Y ++K G+  L K  A++  R GIRVN +SP  + TPL
Sbjct:   32 RVIIGDINKDQMEETVDAIRKNGGQAES---FHLDVSDENSVKAFADQIKDACGTIDILFNNAG-VDQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLMLENG-GSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMAIDYARNGIRVNSISPGTIETPL 192          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YF3H_SCHPO (Uncharacterized oxidoreductase C22A12.17c OS=Schizosaccharomyces pombe GN=SPAC22A12.17c PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   39 GESVCKDIGXXXXXANGCSYV--HCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASH--AYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP-YVVATPLAKDFYK 521
            GE   K+I      ANG       CDVT  KE+E+A       +  +DI+  N GI      + +D    EF   ++VNL+GVF    +A  + +  G GS+++TAS+ GV+  V     AY +SK GV+ L+K+ AVE  +F  RVNCVSP Y  +      F+K
Sbjct:   57 GEKAAKEIAQ----ANGVKTYTCKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNNGIC--TGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWRKFA-RVNCVSPGYTTSDMTGGKFHK 215          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            Y   D++K  EIE+ +  A S +G  DI+ NNAGI   A   I D     ++ ++++NL   F  T+ A   MK    G II+ AS  G++      AY ++KHG+VG  K  A+E  + G+  N + P  V TPL +
Sbjct:   57 YHGADMSKAAEIEDMMRYAQSDFGGADILVNNAGIQHVAA--IEDFPPERWDAIIAINLTSAFHTTRLALPGMKQKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPGWVLTPLVQ 192          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 55/175 (31.43%), Postives = 91/175 (52.00%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQA----EFELVLSVNLVGVFLGTKHAARVM------KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V++AD+    G  V K++G          +V  DVT EK++  A+ TA  ++G+LD+  N AG     K    + + A    +F+ V+++N VG F   + +A +M      +   RG I++TASV    G +   AY++SK  VVG+    A +L   GIR+  ++P +  TP+
Sbjct:   31 VILADLPSSKGNEVAKELGDKVV------FVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAPGLFNTPM 199          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 59/138 (42.75%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDE-AKHNILDNDQAEFELVLSVNLVGVFLGTKHAARV--MKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            CDV    +I   V  AV +YG +DI+ NNAG     A   I D    +   V++ NL  VFL TK       M    RG II+ AS  G  G V +  Y++SKHGVVGL K   +EL R GI VN V P  V TP+A+
Sbjct:   73 CDVADPAQIRAYVAAAVQRYGTVDILVNNAGRSGGGATAEIADELWLD---VITTNLTSVFLMTKEVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLELARTGITVNAVCPGFVETPMAE 207          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.272e-16
Identity = 50/166 (30.12%), Postives = 94/166 (56.63%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            +V+I D  +  G +V +++        G  ++ CDVT+E+++   V+  + ++G+LD + NNAG     +     + Q  F  +L +NL+G +  TK A   ++ + RG++I+ +S+ G IG   +  Y ++K  V  + K  A++  ++G+RVNC+SP  + TPL
Sbjct:   35 QVVICDKDEARGRAVERELP-------GTVFLLCDVTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQG-FRQLLELNLLGTYTLTKLALPHLRKS-RGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPL 191          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 50/173 (28.90%), Postives = 96/173 (55.49%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKDFYKL 524
            RV+I D  +  G ++ +++        G  ++ CDVT+E +++  V+  + ++G+LD + NNAG     +     + Q  F  +L +NL+G +  TK A   ++ + +G++I+ +S+ G IG   +  Y ++K  V  + K  A++   +G+RVNC+SP  + TPL ++   L
Sbjct:   35 RVVICDKDESGGRALEQELP-------GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQG-FRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAAL 198          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
HCD2_MOUSE1.264e-1634.093-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musc... [more]
FABG4_BRANA1.651e-1634.853-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
FABG_BACSU2.156e-1635.213-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
YXBG_BACSU2.816e-1633.73Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
YF3H_SCHPO3.677e-1636.75Uncharacterized oxidoreductase C22A12.17c OS=Schiz... [more]
BDHA_RALEH3.677e-1635.51D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
HCD2_DROME4.803e-1631.433-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]
DHK1_STRVN4.803e-1642.75Granaticin polyketide synthase putative ketoacyl r... [more]
DHB14_BOVIN6.272e-1630.1217-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
DHB14_HUMAN8.192e-1628.9017-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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