CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300068_ssr69 microsatellite CX300068_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5835 contig Ccv1_Contig5835:156..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.018e-14
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAAR-VMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V  DVTKE+++ N V TA+ ++G LD+M NNAG+ +    + L  D   +  V+  NL G FLG++ A +  ++   +G++I+ +SV  +I       Y +SK G+  + +  A+E    GIRVN + P  + TP+
Sbjct:   62 VQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPI 195          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.018e-14
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAAR-VMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V  DVTKE+++ N V TA+ ++G LD+M NNAG+ +    + L  D   +  V+  NL G FLG++ A +  ++   +G++I+ +SV  +I       Y +SK G+  + +  A+E    GIRVN + P  + TP+
Sbjct:   62 VQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPI 195          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.018e-14
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAAR-VMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V  DVTKE+++ N V TAV ++G LD+M NNAG+ +    + L  +   +  V+  NL G FLG++ A +  ++   +G++I+ +SV  +I       Y +SK G+  + +  A+E    GIRVN + P  + TP+
Sbjct:   62 VRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSLE--NWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPI 195          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BUTA_STAES (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=butA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAA-RVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DV+K+KE E  V  AV+++G+LD+M NNAG+  +A   IL+  + E   + ++N+ G   G + AA + +K   +G II+  S+ G         Y+++KH V    + AA EL   GI VN   P V  T +
Sbjct:   59 DVSKKKEQEELVQFAVTEFGQLDVMVNNAGV--DAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEM 189          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BUTA_STAEQ (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=butA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAA-RVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            DV+K+KE E  V  AV+++G+LD+M NNAG+  +A   IL+  + E   + ++N+ G   G + AA + +K   +G II+  S+ G         Y+++KH V    + AA EL   GI VN   P V  T +
Sbjct:   59 DVSKKKEQEELVQFAVTEFGQLDVMVNNAGV--DAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEM 189          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            +  D+T   EI   ++     +G++DI+ NNAGI+ +    +++    ++  VL+VNL  +F  +K   R M    +G II+  SV   IG      Y+++K G+VG  K+ A+EL   GI VN ++P ++ T +  +
Sbjct:   57 IKLDITNPNEITKTMDFVYKNFGRVDILINNAGIIRDKL--LINMKTQDWNSVLNVNLNSIFYMSKSVIRNMIKNKQGKIITIGSVIAHIGNCGQTNYSAAKLGLVGFHKSLALELAPKGITVNMIAPGLIKTGMTNN 192          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus GN=CBR4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.001e-13
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELV-LSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            CDV KE +++N         G+++ + N AGI    + N+L     E  L  L  NL+G  L  + A + M    RGSI++  SV G+ G      Y++SK G+VG  +  A E+ +  IRVN V+P  + T + KD
Sbjct:   55 CDVAKEHDVQNTFEEIEKNLGRVNFLVNAAGI---NRDNLLVRTNTEDMLSQLHTNLLGSMLTCRAALKTMIKQQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKD 188          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS---IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAV--ELGRFGIRVNCVSPYVVATPLAKDFYK 521
            ++ CDV  ++++ +     V  +G+LDI+ NNAG+          N++  +E  L +NLV V  GT      M     G    II+ +S+ G++       Y +SKHG+VG  ++AA+   L   G+R+N + P  V T + +   K
Sbjct:   60 FIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS---IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAV--ELGRFGIRVNCVSPYVVATPLAKDFYK 521
            ++ CDV  ++++ +     V  +G+LDI+ NNAG+          N++  +E  L +NLV V  GT      M     G    II+ +S+ G++       Y +SKHG+VG  ++AA+   L   G+R+N + P  V T + +   K
Sbjct:   60 FIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   93 SYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            S+   DV+K   +   V   +++Y  +D++ NNAGI  +A   ++   + E+  V++ NL  ++       R M  A  G+II+ +S+ G+ G      Y ++K G++G  K  + E+G   IRVNC++P  + T + K
Sbjct:   60 SFALVDVSKNDMVSAQVQNFLAEYNTIDVIVNNAGITRDAL--LMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTK 196          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
DHGA_BACME2.018e-1434.56Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME2.018e-1434.56Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
DHG2_BACME2.018e-1434.56Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
BUTA_STAES3.442e-1435.34Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
BUTA_STAEQ3.442e-1435.34Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
FABG_BUCBP7.668e-1431.163-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
CBR4_BOVIN1.001e-1334.31Carbonyl reductase family member 4 OS=Bos taurus G... [more]
PGDH_MACFA1.308e-1329.9315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN1.308e-1329.9315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
FABG_CHLTR1.308e-1329.503-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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