CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 46/136 (33.82%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGI--VDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAA-RVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVAT 497
            V  DV+KE+ I+  ++TA+  +G LD+M NN+G   V+   H +   D   ++ V+ VN+ G FLG K A   +MK   +G++++ +SV   I    +  Y++SK G+  + +  A+     GIRVN ++P  +AT
Sbjct:   62 VEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMPHEMSLED---WQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIAT 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 45/136 (33.09%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            CDV KE +++N         G+++ + N AGI  +    ++     +    L  NL+G  L  K A R M     GSI++  S+ G+ G      Y++SK G+VG  +  A E+ R  IRVN V+P  V T + KD
Sbjct:   55 CDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDGL--LVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKD 188          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.970e-13
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKDFYK 521
            C V K ++ E  V TA++ +G +DI+ +NA  V+     ++D  +  ++ +L +N+  + L TK     M+  G GS++  AS+           Y  SK  +VGL KN A+EL    IRVNC++P ++ T  +K  ++
Sbjct:   70 CHVGKAEDRERLVATALNLHGGIDILVSNAA-VNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWE 207          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB8_CALJA (Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Callithrix jacchus GN=HSD17B8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.970e-13
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  243 EFELVLSVNLVGVFLGTKHAARVMKPAG-RGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +++ V++VNL G FL T+ A + +  +G  GSII+ +S+ G +G +    Y +SK GV+GL + AA ELGR GIR N V P  +ATP+ +
Sbjct:    1 DWDKVIAVNLKGTFLVTQAAGQALVSSGCSGSIINISSIVGKVGNMGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 90          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGR-GSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVV 491
            V++AD+  +  + +  +I          + V  DVTKE+++++A   A   YG +DI+ NNAG+   +  +  +    E+ L ++V   G FL  + A + MK   R GS++   S   V  G  + AY+S K     L +  A E G FGIRVN V P  V
Sbjct:  454 VIVADLNIEGAQKIAGEINDAYGKGRAMA-VKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLATSSPFD--ETSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVFVGSKNSVYAGKNASAYSSVKALETHLARCIAAEGGEFGIRVNSVLPDAV 612          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHA-YTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATP 500
            DVTK+K+I+   N       +LD++FN AG V      ILD ++ +++  +++N+  ++L  K     M     G+II+ +SV   I GV +   Y+++K  V+GL K+ A +  + GIR NCV P  V TP
Sbjct:   58 DVTKKKQIDQFAN----DIERLDVLFNVAGFVHHG--TILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTP 183          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: YOXD_BACSU (Uncharacterized oxidoreductase yoxD OS=Bacillus subtilis GN=yoxD PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   93 SYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLA 506
            ++   DV    ++  AV     Q G +DI+ NNAGI        LD    E+E ++ VNL+GV+  T+     M     G II+ +S  G  G   + AY++SK  V+GL ++   E+ +  IRV+ ++P  VA+ ++
Sbjct:   58 AFAAADVKDADQVNQAVAQVKEQLGDIDILINNAGISKFG--GFLDLSADEWENIIQVNLMGVYHVTRAVLPEMIERKAGDIINISSTAGQRGAAVTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDMS 193          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HCAB_PHOLL (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=hcaB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   84 NGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAE----FELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            N    +H DV   ++ E AV   V  +GKLD    NAGI D  K ++LD    +    F+ ++ VNL G  LG K A   +  A  GS+I T S      G     YT+SKHG VG+++  A EL    IRVN V+P
Sbjct:   52 NDICVIHGDVVSFEDNERAVAETVRCFGKLDCFVGNAGIWDH-KISLLDASPEQIDKGFDELMGVNLKGYILGAKAALPALT-ASEGSMIFTLSNSSWFSGGGGVLYTASKHGAVGMIRQLAYELAPV-IRVNGVAP 185          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.107e-12
Identity = 42/134 (31.34%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   81 ANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSP 482
            A G +  + D   E   E  + TA+ ++G++D++ NNAGI+ +   +     + EF  V+ V+L G +  ++ A   M+    G II+TAS  G+ G      Y+++K G+VGL +  A E  ++ I VN ++P
Sbjct:   65 AGGIAVANYDSVNENG-EKIIETAIKEFGRVDVLINNAGILRDV--SFAKMTEREFASVVDVHLTGGYKLSRAAWPYMRSQKFGRIINTASPAGLFGNFGQANYSAAKMGLVGLAETLAKEGAKYNINVNSIAP 195          

HSP 2 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPY 485
            +V++ DIKD    SV ++I             H  VT+   I   + TA+S++ ++DI+ NNAGI+ +   + L     E+  VL V+L   F  +K    +      G II+T S  G+ G      Y ++K  ++G  K  A+E  + GI VN ++P+
Sbjct:  348 KVVVNDIKDPF--SVVEEINKLYGEGTAIPDSHDVVTEAPLI---IQTAISKFQRVDILVNNAGILRD--KSFLKMKDEEWFAVLKVHLFSTFSLSKAVWPIFTKQKSGFIINTTSTSGIYGNFGQANYAAAKAAILGFSKTIALEGAKRGIIVNVIAPH 500          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB8_PIG (Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN=HSD17B8 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.107e-12
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  222 ILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAG-RGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +L   + +++ V++VNL G+FL T+ AA+ +  +G  GSII+ +S+ G +G +    Y +SK GV+GL +  A ELGR+ IR N V P  + TP+A+
Sbjct:  110 LLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQ 206          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
DHG2_BACSU3.805e-1333.82Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
CBR4_HUMAN3.805e-1333.09Carbonyl reductase family member 4 OS=Homo sapiens... [more]
DHRS4_RABIT4.970e-1331.65Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHB8_CALJA4.970e-1343.33Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Ca... [more]
YUXG_BACSU6.491e-1332.10Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
BDH2_BOVIN6.491e-1334.853-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]
YOXD_BACSU8.477e-1331.88Uncharacterized oxidoreductase yoxD OS=Bacillus su... [more]
HCAB_PHOLL8.477e-1338.693-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
FOX2_YEAST1.107e-1231.34Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
DHB8_PIG1.107e-1240.21Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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