CX300073

Overview
NameCX300073
Unique NameCX300073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.505e-35
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSD
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.505e-35
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSD
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.505e-35
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSD
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.802e-35
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D A+ T RN+IHGSD
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.802e-35
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF MIKPDGV+RGL  EI+ R +KKG+ + GLK M + R  AE+HY +   +PFFG L+++ITSGPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSD
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSD
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_STAAU (Nucleoside diphosphate kinase OS=Staphylococcus aureus GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSD
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_STAAT (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSD
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSD
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118
[Close]
BLAST of CX300073 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSD 406
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSD
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118
The following BLAST results are available for this feature:
BLAST of CX300073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISMO7.505e-3557.63Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMH7.505e-3557.63Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMF7.505e-3557.63Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMC9.802e-3556.78Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DEIGD9.802e-3556.78Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_STAAW1.672e-3458.47Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAU1.672e-3458.47Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAT1.672e-3458.47Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS1.672e-3458.47Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAR1.672e-3458.47Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionC07005G06SK SaltLeaf1 Citrus clementina cDNA clone C07005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300073 ID=CX300073; Name=CX300073; organism=Citrus clementina; type=EST; length=406bp
TGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGAC
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