CX300083

Overview
NameCX300083
Unique NameCX300083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3572 contig Ccv1_Contig3572:81..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.158e-21
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            THT+C RCG  S+HLQKS+C+ C YPAA+ R++NWS KA  RK  GTGRMRYL+++ RRF++G REG
Sbjct:   15 THTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.343e-20
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 3
Query:   57 RCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 209
            RC+ACAYPAAR R YNWSVKA+RRKTTGTGRMRYLR+VPRRFK+ FREGT+
Sbjct:    2 RCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTE 52          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_LEIIN (60S ribosomal protein L37 OS=Leishmania infantum GN=RPL37 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 197
            TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:   15 THILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_LEIDO (60S ribosomal protein L37 OS=Leishmania donovani GN=RPL37 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 197
            TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:   15 THILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_ENCCU (60S ribosomal protein L37 OS=Encephalitozoon cuniculi GN=RPL37 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   12 LCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 197
            +C RCGR+S+H QK+ C++C YP  + R    S+KA RR+T GTGRMRY++   R  K+G +
Sbjct:   18 MCRRCGRQSYHKQKNSCSSCGYPNPKMRNPG-SIKARRRRTIGTGRMRYMKRELRAAKNGHK 78          
The following BLAST results are available for this feature:
BLAST of CX300083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL372_DROME5.158e-2162.69Probable 60S ribosomal protein L37-B OS=Drosophila... [more]
RL37_SOLLC3.343e-2084.3160S ribosomal protein L37 (Fragment) OS=Solanum ly... [more]
RL37_LEIIN1.659e-1964.6260S ribosomal protein L37 OS=Leishmania infantum G... [more]
RL37_LEIDO1.659e-1964.6260S ribosomal protein L37 OS=Leishmania donovani G... [more]
RL37_ENCCU4.839e-1148.3960S ribosomal protein L37 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionC07005H04SK SaltLeaf1 Citrus clementina cDNA clone C07005H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300083 ID=CX300083; Name=CX300083; organism=Citrus clementina; type=EST; length=435bp
AGACGCACACTTTGTGTGTGCGATGTGGCCGTCGCAGCTTCCATCTTCAG
AAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTCGCAAGAGAACGTA
TAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACTGGAACCGGCAGGA
TGAGGTATCTGCGCCATGTCCCTCGCAGGTTCAAGAGCGGCTTCAGAGAA
GGTACTCAGGCAGCACCAAGGAAGAAGGGAGCAGCTGCCTCTGCTTAAGG
AGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCATTATAGATTTAGT
CTTCTTTAATGTGTGGAGACAAGATTCATGGGAACATAATTTTGAAAAAG
GATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTATGATTACTATGTA
GTCTTTTTCAATTTTGGACAAGATGAATGAGTTTA
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