CX300089

Overview
NameCX300089
Unique NameCX300089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length343
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.485e-27
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   73 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSD+ H   HF +  D+GA+ TFP+Q   +RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +
Sbjct:    1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRRE 92          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   82 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            E+HH E +   A++GA+ TFP+Q   +RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +
Sbjct:    3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRRE 92          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  100 SKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            ++A +GAS TFP Q   +RKNG++VIKG PCK+V++STSKTGKHGHAK +   IDIF GKK E+I PS+HN DVP+V+R +
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKE 93          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.154e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  109 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 258
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  127 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTR 336
            T P++AG I+   +IVI G PCKVVEV  SKTGKHG AK   VGI  F+G K   +VP+    +VP + +
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKK 72          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_AERPE (Translation initiation factor 5A OS=Aeropyrum pernix GN=eif5a PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  145 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTR 336
            G ++K  YIVI G PC++VE+S +KTGKHG AK H V I +F+G+K   + P      +P + +
Sbjct:    9 GDLKKGSYIVIDGEPCRIVEMSRAKTGKHGSAKAHVVAICVFSGQKKSLVAPVDTRVQIPVIEK 72          
The following BLAST results are available for this feature:
BLAST of CX300089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A2_CAEEL1.485e-2762.37Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL9.625e-2761.11Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_DICDI9.009e-2561.73Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A_SCHMA7.154e-1466.00Eukaryotic translation initiation factor 5A (Fragm... [more]
IF5A_THEPD2.082e-1350.00Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_AERPE5.669e-1143.75Translation initiation factor 5A OS=Aeropyrum pern... [more]

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Properties
Property NameValue
Genbank descriptionC07005H10SK SaltLeaf1 Citrus clementina cDNA clone C07005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300089 ID=CX300089; Name=CX300089; organism=Citrus clementina; type=EST; length=343bp
TGAAGGTATAGTTCGATTCTAACAAAATTTGGTTGTCGAAGCTCTAATTG
TGAATCGCAGGAACCAGACGATATGTCGGACGAAGAGCACCACTTTGAGT
CGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAGGCCGGAACG
ATTCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTGCAAGGTTGT
TGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTAAGTGTCACT
TTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCC
TCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGACT
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