CX300089
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.485e-27 Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1 Query: 73 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342 MSD+ H HF + D+GA+ TFP+Q +RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF KKLEDI PS+HN DVP V R + Sbjct: 1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRRE 92
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27 Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1 Query: 82 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342 E+HH E + A++GA+ TFP+Q +RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF KKLEDI PS+HN DVP V R + Sbjct: 3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRRE 92
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25 Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 Query: 100 SKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342 ++A +GAS TFP Q +RKNG++VIKG PCK+V++STSKTGKHGHAK + IDIF GKK E+I PS+HN DVP+V+R + Sbjct: 13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKE 93
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.154e-14 Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 109 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 258 D GASKT P+Q +RK G++V+K RPCK+VE+STSKTGKHG AK H VG Sbjct: 3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 127 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTR 336 T P++AG I+ +IVI G PCKVVEV SKTGKHG AK VGI F+G K +VP+ +VP + + Sbjct: 3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKK 72
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_AERPE (Translation initiation factor 5A OS=Aeropyrum pernix GN=eif5a PE=3 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11 Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 145 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTR 336 G ++K YIVI G PC++VE+S +KTGKHG AK H V I +F+G+K + P +P + + Sbjct: 9 GDLKKGSYIVIDGEPCRIVEMSRAKTGKHGSAKAHVVAICVFSGQKKSLVAPVDTRVQIPVIEK 72 The following BLAST results are available for this feature:
BLAST of CX300089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300089 ID=CX300089; Name=CX300089; organism=Citrus clementina; type=EST; length=343bpback to top |