CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 46/84 (54.76%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + +
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMV 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 46/84 (54.76%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + +
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMV 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 47/84 (55.95%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+D+S++  V+ SE PVLV+FWAPWCGPCRM+AP ++E++++Y GKV   KLNTD++PN A++YGIRSIPT++ FK G++ + +
Sbjct:    7 VSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMV 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 498
            VTDSS++  V+ S+ PVLV+FWA WCGPC+M+ P I+E++KE  GKV   K+N D++PNI ++YGIRSIPT++ FKNGE+K++
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDT 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 47/87 (54.02%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V  VTD+S++  VI++  PVLV+FWAPWCGPCRM++P ++E+A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK GE+ +++
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTV 89          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.024e-25
Identity = 46/87 (52.87%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V  VTD+S++  VI+++ PVLV+FWAPWCGPCRM++P ++ +A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK+GE+ +++
Sbjct:    3 VSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTV 89          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD S+E  V++SE  VLV+FWAPWCGPCRMI+P I+ELA+EY  +V   K+NTD++P+I+ +YGIRSIPT++ FK+G++ +++
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTV 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 43/84 (51.19%), Postives = 72/84 (85.71%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD++++  V+ S  PVLV+FWAPWCGPCRM+AP ++E+A++Y+ +V   K+NTD++P++A++YGIRSIPT++ FK+G++ +++
Sbjct:    7 VTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTV 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.960e-24
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            +  V D+S+   VI+S  PVLV+FWAPWCGPCRMIA  I+E+A +Y  K+   K+NTD +P IAT+YGIRSIPTV+ F NG+K +++
Sbjct:    3 ISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTV 89          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 498
            VTD S+E  V+ S+ PVLV+FWA WC PCRM+ P IEE++K+   KV   K+N D++P I +KYGIRSIPTV+ FKNGE+K++
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDT 87          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO1_ANASP4.666e-2654.76Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO4.666e-2654.76Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_SYNY37.959e-2655.95Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_RICFE1.773e-2557.83Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO_PORYE2.316e-2554.02Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU3.024e-2552.87Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_CYACA5.159e-2557.14Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO1_SYNE71.149e-2451.19Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_GRIPA1.960e-2456.32Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_RICBR2.560e-2457.83Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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