CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            V++++  ++++ + S    VLV+F+A WCGPCRM+ P +E LA E    V   K+N D++   A  Y + SIPT++ FK+G +
Sbjct:    2 VKIISSENFDSFIASGL--VLVDFFAEWCGPCRMLTPILENLAAELP-HVTIGKINIDENSKPAETYEVSSIPTLILFKDGNE 81          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  211 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAK--EYA-GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            L  A  A + V  +  S+++++V+ S  P LVEF+APWCG C+ +AP  EELA   EYA  KV   K++ D    +  ++G++  PT+ FF +G+ ++ +
Sbjct:   12 LAAAVAAKSAVLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFF-DGKSEQPV 110          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  298 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+++F A WCGPCR IAP   E AK++ G V   K++ D+   +A KY + ++PT LF K+G + + +
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKV 97          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  298 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+++F A WCGPCR IAP   E AK++ G V   K++ D+   +A KY + ++PT LF K+G + + +
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKV 97          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  286 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            S   ++++F A WC PCRMIAP   +LAK++      FK++ D+  ++A ++G+ ++PT +F K GE
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGE 93          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  217 KAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTD--DSPNIATKYGIRSIPTVLFF----KNGEKKE 495
            K ++A + V  ++ S+++++V+     VLVEF+APWCG C+ + P  E L   YA +  V   K++ D  D+  I +KYG+   PT+ +F    K+GEK E
Sbjct:  136 KVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYE 236          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO3_CORNE (Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 26/73 (35.62%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 468
            + + ++ N + +S+ PVL++ WA WCGPC+M+AP   ++AK+    V   K++T+ +P ++  + +RSIPT++
Sbjct:   40 LNEQNFSNFISNSDLPVLIDLWAEWCGPCKMMAPHFAQVAKQNP-YVVFAKIDTEANPRLSAAFNVRSIPTLV 111          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  217 KAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            K   A + V V+T  ++  +V+     VLVEF+APWCG C+ +AP  E++A  +  +  V    L+ D   ++A KY +   PT+ FF  G K
Sbjct:  141 KIATAPSHVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNK 233          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 30/91 (32.97%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK----VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+VV   +++++V+  +  VL+EF+APWCG C+ + P    LAK+Y G+    +A      +D P  + +Y +   PT+ F  +G+KK  +
Sbjct:  527 VKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVP--SDRYKVEGFPTIYFAPSGDKKNPV 615          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  286 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            S   ++++F A WC PCRMIAP   +LAK++      FK++ D+  N+A ++G+ ++PT +  K+G   + +
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKV 98          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO_CHLPN4.240e-1138.55Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
ERP38_NEUCR4.240e-1137.00Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
TRXH_ORYSJ5.537e-1141.18Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.537e-1141.18Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH4_ARATH5.537e-1138.81Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
PDI1_DICDI5.537e-1136.63Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
THIO3_CORNE7.232e-1135.62Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 ... [more]
PDIA6_MEDSA7.232e-1135.48Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA4_HUMAN7.232e-1132.97Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
TRXH2_BRANA9.445e-1134.72Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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