CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 43/79 (54.43%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            VT++++++ V+ S+ PVLV F  PWCGPC+M+AP ++E+A EY GKV   K+NTD++P +A++YG+RSIPT L FK GE
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGE 84          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 42/79 (53.16%), Postives = 64/79 (81.01%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            V +S++++ V+ S  PV+V+FWA WCGPC+MIAPA++E+A E AG+V   K+N D++P +A ++G+RSIPT+L FK+GE
Sbjct:    5 VDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGE 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.519e-21
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            VTD S+E+ V+ S  PVLV++WA WCGPC+MIAP ++E+A EYAG++   KLN D++PN   +YGIR IPT++  +  E
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 4.519e-21
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD S+E  V+ ++ PVLV+FWA WCGPCR IAP++E +A EY  K+   KLN D++P  A KYG+ SIPT+  ++ GE  ++I
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTI 91          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.902e-21
Identity = 40/78 (51.28%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG 483
            VTD+S+E  V+ ++ PVLV++WA WCGPC+MIAP ++E+A++Y GK+   KLN D++ +   KYG+R IPT++ FK+G
Sbjct:    8 VTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDG 85          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  253 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            TD +++  ++ S+  VLV+FWA WCGPC M+ P IE+LA +Y GK    KLN D++PNIA +YGIRSIPT+L  K G+
Sbjct:    8 TDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGK 85          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            VTD S+E  V  S +PVLV++WA WCGPC+M AP  +E+A EYAG+V   K N D++PN   +YG R IPT++ F+ GE
Sbjct:    7 VTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGE 85          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            V+D S+E  V+ S  PVLV+FWA WCGPC+MIAP +EE+A EYA ++   K N D++PN   +Y IR IPT+L FK G+
Sbjct:    8 VSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK 86          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO_ECOL63.130e-2255.70Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO573.130e-2255.70Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO_STRAU5.338e-2254.43Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
THIO1_CORNE1.553e-2153.16Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_THIRO4.519e-2153.16Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_STRCO4.519e-2151.19Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_PSEAE5.902e-2151.28Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_CHLLT7.709e-2153.85Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_CHRVI1.007e-2053.16Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_THIFE1.315e-2054.43Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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