CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            VTD++++  V  S+ PV+V+FWA WCGPCR I PA+EEL+KEYAGKV   K+N D++P      G+R IP +  FKNG+
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQ 84          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 41/80 (51.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            V DS +   V+ S+ PV+V+FWAPWCGPCR+IAP +++LA EYAG++   K+NTDD+   A++ GI+ IPT++ FK+G +
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGRE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 41/83 (49.40%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  238 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            EV   TD+++   V++S+ PVL++FWAPWCGPCRMI+P ++E+A E++GKV   K+N D++     + G+RSIPT++ FKNG+
Sbjct:    2 EVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGK 84          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 41/85 (48.24%), Postives = 63/85 (74.12%), Query Frame = 1
Query:  232 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +N++  +TD ++E  V++S++  LV+FWA WC PC+++AP +EE++KEY+ KV   KLN +++PN A  Y IRSIPT+L F N E
Sbjct:    1 MNKIIELTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSE 85          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  253 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            TD +++  +++S+   LV+FWA WCGPC M+ P IEELA +Y GK    KLN D++PN A +YGIRSIPT+L  K G+
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGK 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGE 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGE 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            V+D+S+E  V+ ++ P  V+FWA WCGPCR  APA+EELA     KV   K+N D++P   +KYG+R IPT++ FK+G+
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQ 82          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  235 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            N +  +TD  ++  ++ S+  VLV+FWA WC PC+++AP +E++AKEY  K+   K+N D +PN A KY IR IP +L FKN E
Sbjct:    3 NCIVELTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD ++E  V+ SE PVLV+FWA WCGPCR IAP++E +  E+ G++   KLN D +P  A KYG+ SIPT+  ++ GE  ++I
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTI 90          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO_RHOSH1.315e-2053.16Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_CHLAA2.929e-2051.25Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO_PASMU4.997e-2049.40Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_BUCAI6.526e-2048.24Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO2_CHLTE8.523e-2052.56Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_HELPY2.480e-1950.63Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.480e-1950.63Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_RHORU5.524e-1949.37Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_BUCBP9.423e-1946.43Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_STRCL1.231e-1850.00Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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