CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS++++ + S  N  LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A K+ + SIPT++ FK+GE  + +
Sbjct:    6 VTDSNFDDNIQSGVN--LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG 483
            +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P   +++GI SIPT++ FK G
Sbjct:    5 LTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG 81          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  253 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            TD +++  V+ +E PVLV+FWA WC PC+ IAP +EEL+ EYAGKV   K++     + A KY IR+IP +L FK+GE
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGE 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + +
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + +
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO_STAS11.231e-1848.81Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_ALIAC1.607e-1850.00Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
THIO2_CORNE1.607e-1851.28Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_STAES2.099e-1848.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ2.099e-1848.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU4.677e-1847.62Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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