CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQ 117          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQ 117          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.777e-17
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E   ++   KL+ D +P +A ++ + SIPT++ F+ G+  + I
Sbjct:  354 VTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRI 437          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.152e-16
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  283 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 498
            +SE  VL +FWAPWCGPC+MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT+L  K+GE  E+
Sbjct:   15 TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  232 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +N++  +TD ++E  V+  ++ VLV+FWA WC PC+++AP +EE+A+EY  K+   KLN + +PN A  Y IR IP +L F   E
Sbjct:    1 MNKIIELTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGRE 85          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.377e-16
Identity = 30/75 (40.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  268 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK 492
            ++L+ +SE PV ++FWA WCGPC+M+AP++++LA E+ G++   K+N D  P+ A ++ ++ IP ++ F  G+ K
Sbjct:    6 DDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLK 80          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+I
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETI 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+I
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETI 86          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT--KYGIRSIPTVLFFKNG 483
            VTD S+   V+ S  PVLV+FWA WCGPC+M+AP +EE+A E   ++   K++ D   N AT   + + SIPT++ FK+G
Sbjct:   10 VTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDG 89          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 30/76 (39.47%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  268 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 495
            + L+++ +  V+++F+A WCGPC++IAP ++ELA EY+ +V   K+N D++ +I  +Y + S+PT +F K G   E
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLE 88          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO2_ECOL61.361e-1748.57Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO571.361e-1748.57Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
TRXB_MYCLE1.777e-1745.24Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_BACSU1.152e-1651.39Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_BUCAP1.504e-1643.53Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO1_CHLTE4.377e-1640.00Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_LISMO2.172e-1542.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN2.172e-1542.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_MYCSM3.706e-1546.25Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIOT_DROME8.255e-1539.47Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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