CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +TD+ +E        PVLV FWA WCGPCR++APAI+ +AK+Y  K+   KL  D +P    +  +  +P +  FKN E
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNE 84          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 31/76 (40.79%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  259 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +++  ++  S  PVLV+F+A WCGPC+M+AP +E++      ++   K++TD  P IAT+Y I+S+PT++ FK G+
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQ 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  223 REAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            R  +    V     +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+
Sbjct:   56 RVCLTTFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGD 143          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  265 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGD 143          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  265 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGD 143          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  292 NP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            NP V+V+FWAPWCG C+M+ P +EE+  E    V   KLN DD  ++A ++ + SIPT++ FK+G++
Sbjct:   18 NPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKE 84          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  265 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGD 143          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13
Identity = 30/83 (36.14%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            ++ + +S + + V+ S  PVLVEF A WCGPC++I PA+E L++EY  K+   K++ D +P +  ++ +  +P  + FK+G++
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKE 153          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            VI S  PV+V+F A WCGPC+ + P +EE      G V   K+N D +  +A  YGI ++PTV  FKNGEK
Sbjct:   52 VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEK 122          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13
Identity = 32/82 (39.02%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  244 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 489
            Q+ + S +++ + S +  V+V+F+A WCGPC+MIAP IE+ A++Y+   A +KL+ D+  ++A K  + S+PT++F+K G++
Sbjct:    4 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKE 84          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO2_SYNY31.078e-1441.77Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO1_SYNY34.097e-1440.79Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIOM_MOUSE5.351e-1436.36Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_RAT6.988e-1440.54Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_HUMAN6.988e-1440.54Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_TREPA9.127e-1446.27Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]
THIOM_BOVIN9.127e-1440.54Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXX_ARATH1.557e-1336.14Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_CAEEL1.557e-1347.89Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
TRX2_YEAST2.656e-1339.02Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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