CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10205 contig Ccv1_Contig10205:124..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  274 LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 495
            L  +S   V+++F+A WCGPC+MI+P + EL+ +YA  V   K++ D+  +IA +Y I S+PT +F KNG K E
Sbjct:   15 LTKASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVE 88          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  286 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            S   ++V+F+A WCGPCRMI+PA E L+ E+ G     K+NTD + +I  +Y I ++PT LFFKN ++ +S+
Sbjct:   21 SNRLIIVDFFANWCGPCRMISPAFERLSMEF-GNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSV 91          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 498
            V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D +P    KY +  +P +   K  +  +S
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDS 90          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 29/83 (34.94%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  256 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK-NGEKKESI 501
            D  W       + P +++F+A WCGPC+M++P  E+L+K+Y   +  +K++TD   +I++  G++S+PT+LF   +G+ K S+
Sbjct:   20 DKEWS---FRGDRPAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSV 99          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  274 LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 495
            L  +S   V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+  +IA +Y I S+PT +F KNG K E
Sbjct:   23 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVE 96          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG-EKKESI 501
            + S++  V+V+FWA WCGPC++ +P  ++ A E++      K+N DD  +IA  Y I S+PT++ F+NG EKK +I
Sbjct:   14 IFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFS-DAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAI 88          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 495
            VQ+V+  ++ + + S    VLV+F+A WCGPC+M+ P +E LA E    V   KL+ D SP  A ++G+ SIPT++ FK+G++ E
Sbjct:    2 VQIVSQDNFADSIASGL--VLVDFFAEWCGPCKMLTPVLEALAAELP-YVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVE 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  259 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            + ++  V  +  PV+V+F A WCGPC+ IAPA+E+L++ + G +  +K++ D+   +A   G+ ++PT  F+K GE+ E +
Sbjct:   10 AEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEV 89          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 495
            VQVV+  ++ + + S    VL++F+A WCGPC+M+ P +E LA E    V   K++ D SP  A +Y + SIPT++ FK+G++ E
Sbjct:    2 VQVVSQENFADSIASGL--VLIDFFAEWCGPCKMLTPVLEALAAELP-HVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVE 83          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  241 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            V+VV+  ++ + + +    VL++F+A WCGPC+M+ P +E L  E    V   K+N DD P  A +YG+ SIPT++ FK+G++ + +
Sbjct:    2 VKVVSAENFNSFIATGL--VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRV 85          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO2_DROYA3.468e-1344.59Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
NGLY1_CAEBR4.530e-1345.83Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO2_ANASP7.727e-1336.05Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_BORBU1.009e-1234.94Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_DROME1.009e-1243.24Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_MYCGE1.318e-1242.11Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]
THIO_CHLMU1.318e-1242.35Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_PENCH2.248e-1235.80Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLTR2.248e-1241.18Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIO_CHLCV3.835e-1237.93Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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