CX300104

Overview
NameCX300104
Unique NameCX300104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15160 contig Ccv1_Contig15160:628..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_ACTP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=metE PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.855e-52
Identity = 101/163 (61.96%), Postives = 124/163 (76.07%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVTIL WSFVRND PR   C QI +A+ DEV DLEKAGI VIQIDE A+REGLPL++++ D YL+WA  +FR++  GV+D TQ+HTHMCYS FNDI+ +I  +DADVITIE SRSD +LL+ F +  KY   IGPGVYDIHSPR+P+  EI   + K L V+
Sbjct:  555 GPVTILQWSFVRNDIPRSTVCKQIGVALSDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLQWAGEAFRLSYMGVKDDTQIHTHMCYSEFNDILPAIAGLDADVITIETSRSDMELLTAFAD-FKYPNDIGPGVYDIHSPRVPTAGEIEHLLRKALKVI 716          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_HAEIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae GN=metE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.034e-52
Identity = 100/163 (61.35%), Postives = 124/163 (76.07%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVTIL WSFVRND PR   C QI +A+ DEV DLE AGI VIQIDE A+REGLPL++++ D YL+WA  +FR+++ GVQD TQ+HTHMCYS FNDI+ +I  +DADVITIE SRSD +LL+ F +  KY   IGPGVYDIHSPR+P+  E+   + K L V+
Sbjct:  555 GPVTILQWSFVRNDIPRSTVCKQIGVALSDEVLDLEAAGIKVIQIDEPAIREGLPLKRADWDAYLQWAGEAFRLSSMGVQDDTQIHTHMCYSEFNDILPAIAALDADVITIETSRSDMELLTAFAD-FKYPNDIGPGVYDIHSPRVPTATEVEHLLRKALNVI 716          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_HAEIG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae (strain PittGG) GN=metE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.034e-52
Identity = 100/163 (61.35%), Postives = 124/163 (76.07%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVTIL WSFVRND PR   C QI +A+ DEV DLE AGI VIQIDE A+REGLPL++++ D YL+WA  +FR+++ GVQD TQ+HTHMCYS FNDI+ +I  +DADVITIE SRSD +LL+ F +  KY   IGPGVYDIHSPR+P+  E+   + K L V+
Sbjct:  555 GPVTILQWSFVRNDIPRSTVCKQIGVALSDEVLDLEAAGIKVIQIDEPAIREGLPLKRADWDAYLQWAGEAFRLSSMGVQDDTQIHTHMCYSEFNDILPAIAALDADVITIETSRSDMELLTAFAD-FKYPNDIGPGVYDIHSPRVPTATEVEHLLRKALNVI 716          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_HAEIE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae (strain PittEE) GN=metE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.034e-52
Identity = 100/163 (61.35%), Postives = 124/163 (76.07%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVTIL WSFVRND PR   C QI +A+ DEV DLE AGI VIQIDE A+REGLPL++++ D YL+WA  +FR+++ GVQD TQ+HTHMCYS FNDI+ +I  +DADVITIE SRSD +LL+ F +  KY   IGPGVYDIHSPR+P+  E+   + K L V+
Sbjct:  555 GPVTILQWSFVRNDIPRSTVCKQIGVALSDEVLDLEAAGIKVIQIDEPAIREGLPLKRADWDAYLQWAGEAFRLSSMGVQDDTQIHTHMCYSEFNDILPAIAALDADVITIETSRSDMELLTAFAD-FKYPNDIGPGVYDIHSPRVPTAAEVEHLLRKALNVI 716          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.587e-52
Identity = 104/163 (63.80%), Postives = 123/163 (75.46%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVT+L WSFVR+DQPR  TC QIALAI+DEV+DLE+AGI +IQ+DEAALREGLPLRKS    YL WAV +FR+T  GV D+TQ+HTHMCYS FN I   I  MDADVI+IE SRS+ +LL V  E   Y   IGPGVYDIHSPR+PS  E+ + + K   V+
Sbjct:  556 GPVTMLCWSFVRDDQPRSATCKQIALAIRDEVQDLEQAGIKIIQVDEAALREGLPLRKSAWREYLGWAVDAFRLTASGVADSTQIHTHMCYSEFNHIAEWIAKMDADVISIEASRSNMELLGVL-ESFTYPNDIGPGVYDIHSPRVPSVAEMVELLRKASEVI 717          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.465e-51
Identity = 102/152 (67.11%), Postives = 116/152 (76.32%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEI 466
            GPVTILNWSFVR+D PR   C QIALAI+DEV DLE  G  +IQIDEAALREGLPLR+ + D YL WAV SFR+   GV D TQ+HTHMCYS FNDII +I  MDADVI+IE +RS  +LL  F  G  Y A IGPGVYDIHSPR+P+ EE+
Sbjct:  578 GPVTILNWSFVRDDLPRETACRQIALAIRDEVVDLEATGAAIIQIDEAALREGLPLRRGDWDAYLDWAVESFRLAASGVADATQIHTHMCYSEFNDIIAAIGAMDADVISIETARSKMELLDAF-VGYAYPAQIGPGVYDIHSPRVPAVEEM 728          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.913e-51
Identity = 102/156 (65.38%), Postives = 119/156 (76.28%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRI 478
            GPVTILNWSFVR+D PR E C Q+ALA++DEV DLE AG  +IQIDEAALREGLPLR+S+   YL WA   FRI + GV D TQ+HTHMCYS FNDII +I  MDADVI+IE SRS  +LL  FR   +Y   IGPGVYDIHSPR+P T+E+ + I
Sbjct:  576 GPVTILNWSFVRDDIPRSEVCRQLALAMRDEVRDLENAGAAMIQIDEAALREGLPLRRSDWKAYLDWAGDCFRICSSGVTDQTQIHTHMCYSEFNDIIGAIAAMDADVISIETSRSKMELLDAFRR-YEYPNQIGPGVYDIHSPRVPETDEMKELI 730          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_NITOC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metE PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.263e-51
Identity = 97/158 (61.39%), Postives = 120/158 (75.95%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSFVR+DQPR +TC Q+AL ++DEV DLE+A I +IQ+DE A REGLPLR+ E + YL WAV  FR+ + GV+D TQ+HTHMCYS FNDIIH+I  +DADVITIE SRSD +LL+ F    +Y   IGPGVYDIHSP +P+  +I   I K
Sbjct:  559 GPVTLLQWSFVRDDQPRADTCLQLALVLRDEVRDLEQADIKLIQVDEPAFREGLPLRRVEWESYLAWAVRCFRVASSGVEDGTQIHTHMCYSEFNDIIHAIAALDADVITIETSRSDGELLAAF-AAFEYPNEIGPGVYDIHSPVVPTEAQIVGLIKK 715          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.262e-51
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVTILNWS+ R+D  R   C QIALAI+DE+ DL+KAGI +IQ+DEAA +EG PLRK +  +Y  WAV SF++        TQ+HTHMCYS+FNDIIH+I  MDADVITIE SRS  KLL+VF     Y+  IGPG+YDIHSPR+PS EE+ ++I  ++ VL
Sbjct:  558 GPVTILNWSYCRSDMERSAVCEQIALAIRDEINDLQKAGIKIIQVDEAAFKEGYPLRKEKVAYYENWAVKSFKLAVSSAAIETQIHTHMCYSDFNDIIHTIEKMDADVITIETSRSGNKLLTVFATR-GYKNEIGPGIYDIHSPRVPSVEELEEKIRNLMLVL 719          
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.262e-51
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 2
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVTIL WSFVR+DQPR  TC Q+ALA++DEV DLEKAG+ VIQIDE A+REGLPLR+++   YL WAV  FR++  GV D TQ+HTHMCYS FNDII SI  MDADVITIE SRS+ +LL  F E   Y   IGPGVYDIHSP +P  + +   + K
Sbjct:  565 GPVTILQWSFVRDDQPREATCRQLALALRDEVLDLEKAGVKVIQIDEPAIREGLPLRRADWQAYLDWAVDCFRLSTAGVADDTQIHTHMCYSEFNDIIESIAAMDADVITIETSRSNMELLKAF-EDFHYPNDIGPGVYDIHSPNVPDVDWMVGLMQK 721          
The following BLAST results are available for this feature:
BLAST of CX300104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
METE_ACTP23.855e-5261.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIN5.034e-5261.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIG5.034e-5261.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIE5.034e-5261.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD8.587e-5263.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR1.465e-5167.115-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA1.913e-5165.385-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITOC3.263e-5161.395-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM4.262e-5159.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORA14.262e-5163.295-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07006B05SK SaltLeaf1 Citrus clementina cDNA clone C07006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300104 ID=CX300104; Name=CX300104; organism=Citrus clementina; type=EST; length=507bp
GCACGAGGCTGGCCCTGTCACCATTTTGAACTGGTCATTTGTTCGAAATG
ATCAGCCCAGATTCGAGACCTGCTATCAGATTGCATTGGCAATCAAGGAT
GAAGTTGAGGATCTTGAGAAAGCTGGTATCACTGTCATCCAGATTGATGA
GGCTGCTTTACGAGAGGGATTACCACTCAGGAAGTCTGAGCAGGACTTTT
ATCTGAAATGGGCTGTGCACTCCTTTAGGATTACTAACTGAGGTGTTCAA
GACACTACCCAGGTCCATACCCACATGTGCTATTCAAACTTCAACGATAT
CATCCACTCAATTATGGACATGGACGCAGATGTGATCACTATTGAGAACT
CTAGATCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTAT
CGCGCTGGCATTGGTCCCGGTGTGTACGACATCCACTCTCCGAGGATCCC
ATCGACAGAAGAAATTGCCGATCGCATCAACAAGATGCTTGCAGTTCTTG
AGAGCAA
back to top