CX300104

Overview
NameCX300104
Unique NameCX300104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15160 contig Ccv1_Contig15160:628..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PSEAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa GN=metE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.586e-48
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQ+HTHMCYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K
Sbjct:  563 GPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRK 719
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.586e-48
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQ+HTHMCYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K
Sbjct:  563 GPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRK 719
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PSEA8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=metE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.586e-48
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQ+HTHMCYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K
Sbjct:  563 GPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRK 719
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.377e-48
Identity = 98/163 (60.12%), Postives = 116/163 (71.17%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 499
            GPVT+L WSFVR+DQPR  T  Q+ALAI+DEV DLEKAGI +IQIDE A REGLPLR+ +   YL+WA   FRI+  GV D TQ+HTHMCYS FNDI+ SI  MDADVITIE SRS  +LL  F     Y   IGPGVYDIHSPR+P  + +   + +   V+
Sbjct:  554 GPVTMLQWSFVRDDQPRSTTALQLALAIRDEVVDLEKAGIRIIQIDEPAFREGLPLRRGDWAAYLEWATRVFRISAAGVADQTQIHTHMCYSEFNDILPSIAAMDADVITIETSRSAMELLDGF-GAFAYPNEIGPGVYDIHSPRVPDAQAMQRLLERACEVI 715
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_MYCTU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.283e-47
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 490
            GPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++Q  YL+WAV +FR+   GV D TQ+HTH+CYS F ++I +I D+DADV +IE +RS  ++L      + +  G+GPGVYDIHSPR+PS EE+AD +   L
Sbjct:  560 GPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDL-NAIGFANGVGPGVYDIHSPRVPSAEEMADSLRAAL 718
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_MYCTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=metE PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.283e-47
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 490
            GPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++Q  YL+WAV +FR+   GV D TQ+HTH+CYS F ++I +I D+DADV +IE +RS  ++L      + +  G+GPGVYDIHSPR+PS EE+AD +   L
Sbjct:  560 GPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDL-NAIGFANGVGPGVYDIHSPRVPSAEEMADSLRAAL 718
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_MYCBP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=metE PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.283e-47
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 490
            GPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++Q  YL+WAV +FR+   GV D TQ+HTH+CYS F ++I +I D+DADV +IE +RS  ++L      + +  G+GPGVYDIHSPR+PS EE+AD +   L
Sbjct:  560 GPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDL-NAIGFANGVGPGVYDIHSPRVPSAEEMADSLRAAL 718
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_MYCBO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis GN=metE PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.283e-47
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 490
            GPVTIL WSFVR+DQP  +T  Q+ALAI+DE  DL+ AGI VIQ+DE ALRE LPLR+++Q  YL+WAV +FR+   GV D TQ+HTH+CYS F ++I +I D+DADV +IE +RS  ++L      + +  G+GPGVYDIHSPR+PS EE+AD +   L
Sbjct:  560 GPVTILAWSFVRDDQPLADTANQVALAIRDETVDLQSAGIAVIQVDEPALRELLPLRRADQAEYLRWAVGAFRLATSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDL-NAIGFANGVGPGVYDIHSPRVPSAEEMADSLRAAL 718
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PSEPW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas putida (strain W619) GN=metE PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.676e-47
Identity = 97/158 (61.39%), Postives = 113/158 (71.52%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSF R D  R     Q+ALAI+DEV DLE A I ++QIDEAA REGLPLR+S    YL+WA  +FR+   GV+D TQ+HTHMCYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EE+   + K
Sbjct:  566 GPVTMLMWSFPREDVSRETQARQLALAIRDEVLDLEAADIKIVQIDEAAFREGLPLRRSAWPAYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EKFDYPNEIGPGVYDIHSPRVPSREEMVKLLRK 722
[Close]
BLAST of CX300104 vs. ExPASy Swiss-Prot
Match: METE_PSEF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metE PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.676e-47
Identity = 95/158 (60.13%), Postives = 113/158 (71.52%), Query Frame = 2 
Query:   11 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN*GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 484
            GPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR+++   YL WA   FR+   GV+D TQ+HTHMCYS FND+I SI  MDADVITIE SRSD +LL  F+    Y   IGPGVYDIHSPR+P   E+A+ + K
Sbjct:  561 GPVTMLMWSFPREDVSREVQARQLALAIRDEVLDLEAAGIRIVQIDEAAFREGLPLRRAQWQHYLDWATEVFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLDAFK-AFAYPNEIGPGVYDIHSPRVPDASEMANLLRK 717
The following BLAST results are available for this feature:
BLAST of CX300104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
METE_PSEAE2.586e-4862.035-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAB2.586e-4862.035-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA82.586e-4862.035-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP3.377e-4860.125-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTU1.283e-4756.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTA1.283e-4756.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBP1.283e-4756.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBO1.283e-4756.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEPW1.676e-4761.395-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEF51.676e-4760.135-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07006B05SK SaltLeaf1 Citrus clementina cDNA clone C07006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300104 ID=CX300104; Name=CX300104; organism=Citrus clementina; type=EST; length=507bp
GCACGAGGCTGGCCCTGTCACCATTTTGAACTGGTCATTTGTTCGAAATG
ATCAGCCCAGATTCGAGACCTGCTATCAGATTGCATTGGCAATCAAGGAT
GAAGTTGAGGATCTTGAGAAAGCTGGTATCACTGTCATCCAGATTGATGA
GGCTGCTTTACGAGAGGGATTACCACTCAGGAAGTCTGAGCAGGACTTTT
ATCTGAAATGGGCTGTGCACTCCTTTAGGATTACTAACTGAGGTGTTCAA
GACACTACCCAGGTCCATACCCACATGTGCTATTCAAACTTCAACGATAT
CATCCACTCAATTATGGACATGGACGCAGATGTGATCACTATTGAGAACT
CTAGATCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTAT
CGCGCTGGCATTGGTCCCGGTGTGTACGACATCCACTCTCCGAGGATCCC
ATCGACAGAAGAAATTGCCGATCGCATCAACAAGATGCTTGCAGTTCTTG
AGAGCAA
back to top