CX300114

Overview
NameCX300114
Unique NameCX300114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length216
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.198e-22
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y++  GNVFKNK +LME IHK KA++AR+K LSDQ EA+R+  +
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTR 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.305e-22
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKR 198
            R RVLRRLL+KYR+SK ID+H+YHD+YMK  GNVFKNK VLME IHK KAEK R K L+DQ EA+R
Sbjct:   98 RQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARR 163          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.305e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRE+K ID+HMYH +Y++  GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R   +
Sbjct:   98 RMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTR 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.630e-19
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKA 213
            R+RVLRRLL+KYRE+K IDKH Y ++Y+K  GNVFKNK  L+E I KSK EK R+K + DQ +A+R  NK+
Sbjct:   98 RIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKS 168          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.098e-17
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            RMRVLR LLR+YR++K +DKH+YH++Y++  GN FKNK  L+E I K K E  R K L+DQ +A+R  NK S
Sbjct:   98 RMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKES 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.013e-17
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            R RVLRRLLRKYRES  IDKH+YH +Y++  GN FK+K  L+E I ++KAE  R K + +Q +A+RA  KA+
Sbjct:   98 RQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAA 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.013e-17
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            R RVLRRLLRKYRES  IDKH+YH +Y++  GN FK+K  L+E I ++KAE  R K + +Q +A+RA  KA+
Sbjct:   98 RQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAA 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 4.946e-15
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            R+RVLRRLL KYR++  IDKH+YH +Y +  GN FK+K  L+E I ++KA+  R+K L+++ EA+R  N+A+
Sbjct:   98 RLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAA 169          
The following BLAST results are available for this feature:
BLAST of CX300114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL19_ICTPU3.198e-2265.7160S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DROME9.305e-2272.7360S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_DANRE9.305e-2264.2960S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI9.630e-1960.5660S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL3.098e-1755.5660S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19B_SCHPO9.013e-1755.5660S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO9.013e-1755.5660S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST4.946e-1550.0060S ribosomal protein L19 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC07006C09SK SaltLeaf1 Citrus clementina cDNA clone C07006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300114 ID=CX300114; Name=CX300114; organism=Citrus clementina; type=EST; length=216bp
AGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGAGAGTCAAAGAA
CATTGACAAGCACATGTACCATGACATGTACATGAAGGTGATGGGTAATG
TATTTAAAAACAAGCTTGTCCTCATGGAGAGAATTCACAAGTCAAAGGCT
GAAAAGGCAAGACAGAAGACTCTTTCTGACCAGCTTGAGGCTAAGCGCGC
CAACAACAAGGCCAGC
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