CX300116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 138 VPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 VP ASK + +LPV E + G D EC++CKE G K + LPCKH FH C+ WL + NSCP+CR+EL+TDD YE Sbjct: 43 VPEASKRAILELPV---HEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYE 122
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16 Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 48 ETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW 392 E +L Q L ++D ++ + D P PPA+K VV LPV+ ++ E DK +C +C + ++E+PCKH FH C+ PWL++ NSCP+CR EL TD+ YE + Sbjct: 26 ELARSLMQGL--DIDSGSFDLSDWDQRLP--PPAAKAVVQSLPVVIISPEQADK---GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEF 133
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15 Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 3 Query: 24 LAERINNSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 LA R+ + + A + L N +D +++ + P PPA+K VV LP ++ D +C +C + + E+PC H FH C+ PWL + NSCP+CRHEL TDD +YE Sbjct: 27 LARRVRGAWSWAPGGRSLFNRMDFEDLGLVDWEHHLP--PPAAKAVVESLP-----RTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYE 140
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15 Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 3 Query: 12 SSRGLAERINNSETVANLFQELVN---------NLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353 + +G E N + +N+F N LDD+I +++E PA ++V+AK+ V +E++D+ G EC IC E + D + +LPCKH FH C+KPWL + +C ICR Sbjct: 318 AQQGEGEPFNPANMFSNIFNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEG---ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15 Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 3 Query: 24 LAERINNSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 LA R+ + + A + L N +D +++ + P PPA+K VV LP ++ + +C +C + + E+PC H FH C+ PWL + NSCP+CRHEL TDD +YE Sbjct: 27 LARRVRGAWSWAPGSRSLFNRMDFEDLGLVDWEHHLP--PPAAKAVVESLP-----RTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYE 140
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14 Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 3 Query: 30 ERINNSETVANLFQELVNNLD-DVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAE--CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 ER + + L + L N +D + + +++ D P PPA+K V LP + G AE C +C + E+PC H FH C+ PWL + NSCP+CRHEL TDD YE Sbjct: 16 ERDPRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP--PPAAKTAVENLPRTVIR-------GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYE 128
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14 Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 3 Query: 141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 PPA+K + L ++ + + CA+CK+ +++G+ ++LPC H +H C+ PWL NSCP+CR +L+TDD YE Sbjct: 231 PPAAKSAIEALETFEVSSSEGEMV---MVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYE 309
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13 Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 3 Query: 30 ERINNSETVANLFQELVNNLD-DVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAE--CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386 E+ + + L + L N +D + + +++ D P PPA+K VV LP + G AE C +C + E+PC H FH C+ PWL + NSCP+CR+EL TDD YE Sbjct: 16 EQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP--PPAAKTVVENLPRTVIR-------GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYE 128
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 3 Query: 141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353 PPASKE + LP I +TE+ +G + C IC + G+ ELPC H FH PC+ WL + +CP+CR Sbjct: 502 PPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 571
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 3 Query: 141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353 PPASKE + LP I +TE+ +G + C IC + G+ ELPC H FH PC+ WL + +CP+CR Sbjct: 567 PPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 636 The following BLAST results are available for this feature:
BLAST of CX300116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300116 ID=CX300116; Name=CX300116; organism=Citrus clementina; type=EST; length=527bpback to top |