CX300116

Overview
NameCX300116
Unique NameCX300116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  138 VPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            VP ASK  + +LPV    E +    G D EC++CKE    G K + LPCKH FH  C+  WL + NSCP+CR+EL+TDD  YE
Sbjct:   43 VPEASKRAILELPV---HEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYE 122          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   48 ETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW 392
            E   +L Q L  ++D    ++ + D   P  PPA+K VV  LPV+ ++ E  DK     +C +C       + ++E+PCKH FH  C+ PWL++ NSCP+CR EL TD+  YE +
Sbjct:   26 ELARSLMQGL--DIDSGSFDLSDWDQRLP--PPAAKAVVQSLPVVIISPEQADK---GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEF 133          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   24 LAERINNSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            LA R+  + + A   + L N +D     +++ +   P  PPA+K VV  LP       ++     D +C +C       + + E+PC H FH  C+ PWL + NSCP+CRHEL TDD +YE
Sbjct:   27 LARRVRGAWSWAPGGRSLFNRMDFEDLGLVDWEHHLP--PPAAKAVVESLP-----RTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYE 140          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   12 SSRGLAERINNSETVANLFQELVN---------NLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353
            + +G  E  N +   +N+F    N          LDD+I +++E         PA ++V+AK+ V    +E++D+ G   EC IC E   + D + +LPCKH FH  C+KPWL  + +C ICR
Sbjct:  318 AQQGEGEPFNPANMFSNIFNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEG---ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   24 LAERINNSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            LA R+  + + A   + L N +D     +++ +   P  PPA+K VV  LP       ++     + +C +C       + + E+PC H FH  C+ PWL + NSCP+CRHEL TDD +YE
Sbjct:   27 LARRVRGAWSWAPGSRSLFNRMDFEDLGLVDWEHHLP--PPAAKAVVESLP-----RTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYE 140          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 3
Query:   30 ERINNSETVANLFQELVNNLD-DVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAE--CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            ER   +  +  L + L N +D + +  +++ D   P  PPA+K  V  LP   +        G  AE  C +C       +   E+PC H FH  C+ PWL + NSCP+CRHEL TDD  YE
Sbjct:   16 ERDPRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP--PPAAKTAVENLPRTVIR-------GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYE 128          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            PPA+K  +  L    ++    + +     CA+CK+ +++G+  ++LPC H +H  C+ PWL   NSCP+CR +L+TDD  YE
Sbjct:  231 PPAAKSAIEALETFEVSSSEGEMV---MVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYE 309          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 3
Query:   30 ERINNSETVANLFQELVNNLD-DVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAE--CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 386
            E+   +  +  L + L N +D + +  +++ D   P  PPA+K VV  LP   +        G  AE  C +C       +   E+PC H FH  C+ PWL + NSCP+CR+EL TDD  YE
Sbjct:   16 EQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP--PPAAKTVVENLPRTVIR-------GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYE 128          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353
            PPASKE +  LP I +TE+    +G +  C IC    + G+   ELPC H FH PC+  WL +  +CP+CR
Sbjct:  502 PPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 571          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  141 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 353
            PPASKE +  LP I +TE+    +G +  C IC    + G+   ELPC H FH PC+  WL +  +CP+CR
Sbjct:  567 PPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 636          
The following BLAST results are available for this feature:
BLAST of CX300116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RN181_DROME4.411e-1749.40E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
RN181_DANRE4.877e-1638.26E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_MOUSE1.086e-1535.54E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
YKW3_SCHPO5.392e-1534.15Uncharacterized RING finger protein P32A8.03c OS=S... [more]
RN181_RAT9.197e-1534.71E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_BOVIN7.785e-1436.07E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
CIP8_ARATH7.785e-1437.80E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_HUMAN1.734e-1335.25E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
PJA1_MOUSE1.243e-1143.66E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN1.243e-1143.66E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC07006C12SK SaltLeaf1 Citrus clementina cDNA clone C07006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300116 ID=CX300116; Name=CX300116; organism=Citrus clementina; type=EST; length=527bp
GCTCTGCTGAGTCTTCTCGGGGTTTGGCAGAGAGAATTAACAATTCTGAA
ACTGTTGCCAATCTTTTCCAAGAGTTGGTTAATAACCTTGATGATGTTAT
ACCCGAGATACTGGAGACTGATAGTGCAACCCCCAGAGTCCCACCTGCCA
GTAAAGAAGTTGTTGCAAAGCTACCGGTCATTACACTTACAGAAGAAATT
CTGGACAAGTTGGGACATGATGCAGAGTGTGCAATTTGCAAGGAGAACTT
GCTTGTAGGTGACAAAATGCAAGAGTTGCCATGCAAGCACACGTTCCATC
CTCCCTGTCTAAAACCATGGCTGGACGAACATAATTCTTGTCCAATTTGC
CGGCACGAACTGCAAACTGATGACCATGCATATGAGAGCTGGAAGGAGCG
GGAGAAGGAGGCCCAAGAAGAGAGGAAAGGTGCTGCAAATGCTGTACGTG
GTGGTGAATACATGTATGTTTAGTGACGGTTATTTGTTGGAATTCATTGG
CTAGCTGATGACCATGATTATGAGAGC
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