CX300130
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.010e-25 Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 2 Query: 62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ + + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI++ RG+RH GL+VRGQ T+TTGR G Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQRTRTTGRTG 141
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.625e-25 Identity = 56/137 (40.88%), Postives = 89/137 (64.96%), Query Frame = 2 Query: 62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++ + ++A+P IP W +NR KDY+ GK +++ L M R+D+ RL++IR +RG+RH GL VRGQ T++ R G Sbjct: 3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQRTRSNFRHG 139
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25 Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 2 Query: 59 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 466 +ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D+++ V ++P+W N QKD+ G+ + + N L M R D+ R+KKI +RG+RH G +VRGQ TK+TGR Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQRTKSTGR 146
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.303e-24 Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 2 Query: 53 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ L + + ++P W LNRQ D G+ ++ + + L++DL LKK R +RGLRH GL+VRGQ TK+TGRRG Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTIDKFEE-QLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQRTKSTGRRG 139
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.440e-23 Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 2 Query: 50 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 + F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI + RG+RH +GL+VRGQ T+TTGR G Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLG 141
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.881e-23 Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 2 Query: 59 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D + VV+N +IP W NR KD G ++ + M + DD+ LKKIR +RG+RH G +VRGQ TK+TGR G Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQRTKSTGRTG 141
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.209e-23 Identity = 54/136 (39.71%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 68 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 475 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ + V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH G +VRGQ T++TGR+G+ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQRTRSTGRKGR 137
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22 Identity = 52/136 (38.24%), Postives = 86/136 (63.24%), Query Frame = 2 Query: 65 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E++ L + + +P W LNR+KD G ++++ L + +R+D+E +KKI++++G+RH GL+VRGQ T+TTGR G Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQRTRTTGRTG 139
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.548e-22 Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2 Query: 62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 466 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L ++ ++ V N +P+W N QKDY G+ + N L + R D+ R+K I ++RG+RH G +VRGQ TK+TGR Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQRTKSTGR 151
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21 Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 2 Query: 62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L + + V + ++PDW +NRQKD G+ ++ L M DD+ R++K+R++RG+RH G +VRGQ TK+TGR G Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQRTKSTGRTG 139 The following BLAST results are available for this feature:
BLAST of CX300130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300130 ID=CX300130; Name=CX300130; organism=Citrus clementina; type=EST; length=476bpback to top |