CX300130

Overview
NameCX300130
Unique NameCX300130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig309 contig Ccv1_Contig309:61..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.010e-25
Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 2
Query:   62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            + F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++  +   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER KKI++ RG+RH  GL+VRGQ T+TTGR G
Sbjct:    5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQRTRTTGRTG 141          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.625e-25
Identity = 56/137 (40.88%), Postives = 89/137 (64.96%), Query Frame = 2
Query:   62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ GK   +++  L M  R+D+ RL++IR +RG+RH  GL VRGQ T++  R G
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQRTRSNFRHG 139          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   59 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 466
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R+KKI  +RG+RH  G +VRGQ TK+TGR
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQRTKSTGR 146          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.303e-24
Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 2
Query:   53 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++  L   +    + ++P W LNRQ D   G+   ++   + + L++DL  LKK R +RGLRH  GL+VRGQ TK+TGRRG
Sbjct:    1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTIDKFEE-QLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQRTKSTGRRG 139          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.440e-23
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 2
Query:   50 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            +     F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+  L  V+ +  Q  +P W  NR+KDY+ GK   ++ + L    R D+ER  KI + RG+RH +GL+VRGQ T+TTGR G
Sbjct:    1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLG 141          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.881e-23
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 2
Query:   59 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            +++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D +  VV+N    +IP W  NR KD   G    ++   + M + DD+  LKKIR +RG+RH  G +VRGQ TK+TGR G
Sbjct:    5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQRTKSTGRTG 141          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.209e-23
Identity = 54/136 (39.71%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   68 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 475
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++ +   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K++ +RG+RH  G +VRGQ T++TGR+G+
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQRTRSTGRKGR 137          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 52/136 (38.24%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   65 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E++ L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E +KKI++++G+RH  GL+VRGQ T+TTGR G
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQRTRTTGRTG 139          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.548e-22
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 466
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    ++ ++  V N     +P+W  N QKDY  G+ +    N L +  R D+ R+K I ++RG+RH  G +VRGQ TK+TGR
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQRTKSTGR 151          
BLAST of CX300130 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 2
Query:   62 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 472
            E+ ++ +RV NT++DG + +  ALT IKGIG   +  +   A VD +   G+L    +  +   V    + ++PDW +NRQKD   G+   ++   L M   DD+ R++K+R++RG+RH  G +VRGQ TK+TGR G
Sbjct:    4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQRTKSTGRTG 139          
The following BLAST results are available for this feature:
BLAST of CX300130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_SULTO2.010e-2539.4230S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_PYRKO2.625e-2540.8830S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS13_NATPD7.637e-2540.4430S ribosomal protein S13P OS=Natronomonas pharaon... [more]
RS13_METBU1.303e-2439.2930S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_AERPE1.440e-2339.0130S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_METHJ1.881e-2339.8630S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_ARCFU3.209e-2339.7130S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_THEPD1.593e-2238.2430S ribosomal protein S13P OS=Thermofilum pendens ... [more]
RS13_HALMA3.548e-2239.2630S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_METMJ1.761e-2137.9630S ribosomal protein S13P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionC07006E07SK SaltLeaf1 Citrus clementina cDNA clone C07006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300130 ID=CX300130; Name=CX300130; organism=Citrus clementina; type=EST; length=476bp
GAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAATCGAAAATGTCTC
TGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAACACTAAC
GTCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATTAAGGGTAT
TGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTTGACATGA
ACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAATCTCATGGTC
GTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGTTCTTGAACAG
ACAGAAGGATTACAAGGATGGAAAGTATTCTCAGGTTGTATCCAATGCAC
TGGACATGAAGTTGAGAGATGACTTGGAGCGTCTGAAGAAGATCAGGAAC
CACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGACAACACAC
CAAGACCACCGGCCGTCGTGGAAAGA
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