CX300131

Overview
NameCX300131
Unique NameCX300131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1020..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 286
            PN           K+   E+VN A +E+A+ +LKGIL   +EPLVS D+                M  +MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  237 PNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = 2
Query:   53 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            AEEVN AF+ +A   + G+L   DEPLVS D+                M D  VKV+AWYDNEWGYS RVVDL   VA   K
Sbjct:  254 AEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 2
Query:   38 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 271
            +K    E++ AA +E ++  LKGIL   DE LVS DF+               + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  220 AKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 297          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 277
            K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  251 KEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 2
Query:   38 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 292
            S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  255 STRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
The following BLAST results are available for this feature:
BLAST of CX300131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
G3P_BACME9.127e-1443.16Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P2_BACSU9.127e-1448.78Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3PC_HORVU1.318e-1243.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAAW1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC1.318e-1249.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_MYCTU3.835e-1241.18Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC07006E08SK SaltLeaf1 Citrus clementina cDNA clone C07006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300131 ID=CX300131; Name=CX300131; organism=Citrus clementina; type=EST; length=503bp
ACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCT
TCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTG
AAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAG
GTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGG
GAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGGTTAC
TCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTG
AAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCT
TGTTTTTCATTTTTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTG
TAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCA
TTAATCATTATGCAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAA
AAA
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