CX300131

Overview
NameCX300131
Unique NameCX300131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1020..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 2
Query:   56 EEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 286
            E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  255 ETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 292
            K    E++NAAF+ +A+  LKGIL   D P+VS D                 + D+  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  256 KPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   56 EEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 271
            E++ AA +E ++ +LKGIL   ++ LVS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  258 EQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   38 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 292
            +K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  247 AKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   59 EVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 274
            +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++A
Sbjct:  257 QVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVA 325          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   38 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 292
            +K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  247 AKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2
Query:   38 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 271
            +K+   +E+ AA +E ++ +LKGIL   +E +VS DF                +    VK++AWYDNEWGYS RVVDL
Sbjct:  252 AKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDL 329          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 286
            K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  250 KSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 286
            K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  250 KSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 271
            K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL
Sbjct:  250 KATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDL 326          
The following BLAST results are available for this feature:
BLAST of CX300131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
G3P_PODAN2.486e-1140.26Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_MYCAV2.486e-1140.48Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3PC_MESCR2.486e-1143.06Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_KLUMA3.246e-1136.47Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_STAES3.246e-1148.61Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_KLUMA3.246e-1136.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3PC_CRAPL4.240e-1141.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCP75.537e-1136.59Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM5.537e-1136.59Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_ASPNG5.537e-1138.96Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionC07006E08SK SaltLeaf1 Citrus clementina cDNA clone C07006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300131 ID=CX300131; Name=CX300131; organism=Citrus clementina; type=EST; length=503bp
ACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCT
TCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTG
AAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAG
GTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGG
GAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGGTTAC
TCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTG
AAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCT
TGTTTTTCATTTTTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTG
TAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCA
TTAATCATTATGCAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAA
AAA
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