CX300136

Overview
NameCX300136
Unique NameCX300136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus voltae GN=flpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.362e-33
Identity = 72/150 (48.00%), Postives = 102/150 (68.00%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLGA++GTT SHV+D V  +  VYAVEF+ R  R+ +   + R N+ PI+ DA  P +Y  +V  VDVIF DVAQP+QA IL  NA +FLK GG+ +ISIKA  +D T     +F+++ + ++Q+ FK  + + +EPFE+DH
Sbjct:   70 IKKGSKVLYLGASAGTTPSHVAD-VAEDSPVYAVEFAPRIMREFIESCEGRKNLFPILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDVTENPRVIFEAQKEIMEQNGFKIVDAINIEPFEKDH 218          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.085e-33
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH
Sbjct:   72 IKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDH 220          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METJA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanocaldococcus jannaschii GN=flpA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 71/150 (47.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK   ++LYLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+QA IL  NA +FLK GG+ +I+IKA  ID T   + +F+ + + L+   FK  ++V +EPFE+DH
Sbjct:   72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDH 220          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METMP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis GN=flpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.262e-33
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH
Sbjct:   72 IKKGEKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDH 220          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METM7 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=flpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.262e-33
Identity = 71/150 (47.33%), Postives = 100/150 (66.67%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  +++ +EPFE+DH
Sbjct:   72 IKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNARWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEINIEPFEKDH 220          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METM6 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=flpA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.531e-32
Identity = 71/150 (47.33%), Postives = 99/150 (66.00%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLGA++GTT SHV+DI     +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH
Sbjct:   72 IKKGTKVLYLGASAGTTPSHVADIA-ETSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDH 220          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_SULAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus acidocaldarius GN=flpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.000e-32
Identity = 69/150 (46.00%), Postives = 100/150 (66.67%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            I  G ++LYLGAASGTT SH+SDIV   G VY+VEFS R  R+L+ +A+ R N+ PI+ DAR P  Y+ LV  VD+++ D+AQP++  I   NA +FLK  G+ +I+IK+  ID T     ++ +E KKL+   F   E + L+P+++DH
Sbjct:   74 IVKGSKILYLGAASGTTPSHISDIVELQGKVYSVEFSPRVIRELLLVAQYRPNMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNARFFLKKNGYMMIAIKSRSIDVTKDPREIYNAEAKKLEDAGFDIREVLELDPYDKDH 223          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_META3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=flpA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.612e-32
Identity = 72/150 (48.00%), Postives = 103/150 (68.67%), Query Frame = 2
Query:   11 IKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            IK G +VLYLG ++GTT SHV+DI   N  VY+VEF+ R  R+ ++++K R N+IPI+ DA +P +Y  +V  VDVIF DVAQP QA IL  NA +FLK GG+ +ISIKA  +D     + +F+ + + L +  F+  ++V +EPFE+DH
Sbjct:   73 IKKGSKVLYLGVSAGTTPSHVADIT-ENSPVYSVEFAPRIMREFLDVSKDRKNLIPILGDATNPVEYSNVVEEVDVIFEDVAQPKQAEILVNNAKWFLKEGGYGMISIKARSVDVLRNPKEIFEEQKQILIEGGFEIVDEVNIEPFEKDH 221          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_ARCFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Archaeoglobus fulgidus GN=flpA PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 2
Query:   26 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            RVLYLGAASGTTVSH++DIV   G++YAVE+S +    L+ + ++R N+IP++ DA  P KY  +V  VD+I+ D+AQ +Q  IL  NA +FLK  G  VI +KA  IDST   E VF+S +K+++ D FK  +  +L P+ RDH
Sbjct:   60 RVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDH 202          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_METTH (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium thermoautotrophicum GN=flpA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.211e-31
Identity = 68/145 (46.90%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   26 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            RVLYLGA++GTT SH+SDIV  +G VY +EFS R  R+L+ + + R N+ P++EDA  P  Y  +V   D+++ DVAQPDQ R+   N   FLK  G+ +I IKA  ID T     +F+ EV KL+   F+  +QV L P+E+DH
Sbjct:   72 RVLYLGASAGTTASHISDIV-TDGRVYCIEFSPRMMRELLGVCESRKNMAPLLEDASRPLSYLRMVEAADLVYCDVAQPDQTRLFIENMDCFLKRDGYGLIMIKARSIDVTRSPRKIFREEVGKLESSGFRIIDQVGLNPYEKDH 215          
The following BLAST results are available for this feature:
BLAST of CX300136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METVO2.362e-3348.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM53.085e-3348.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METJA4.029e-3347.33Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMP5.262e-3348.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM75.262e-3347.33Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM61.531e-3247.33Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULAC2.000e-3246.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_META32.612e-3248.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_ARCFU1.693e-3148.97Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METTH2.211e-3146.90Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionC07006F04SK SaltLeaf1 Citrus clementina cDNA clone C07006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300136 ID=CX300136; Name=CX300136; organism=Citrus clementina; type=EST; length=462bp
TAATATTTGGATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTT
CCGGCACAACTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTA
GTTTATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATAT
GGCAAAGAAGAGAACCAATGTTATACCCATAATTGAAGATGCTAGACATC
CTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGAC
GTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTT
TCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAG
ATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTG
CAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGAGCCCTTTGA
GCGAGACCACGC
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