CX300136

Overview
NameCX300136
Unique NameCX300136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 2
Query:   20 GVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   DL+ +A  R  + P+++DAR P  Y  +V   VD I  DVA   QA + AL+   FL   G  V ++KA   D T    AVF+  + +L +D ++      +EPF  DH
Sbjct:   60 GDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDH 202          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 2
Query:   20 GVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460
            G  +LYLGAASGTTVSHV+D  GP    YA+EF+ R  RDL+ +A  R N+IP++ DAR P  Y  +V   ++ +  DVA   QA + AL    FL   G  ++ IKA   D     E VF + +  L++       Q  L+ F  DH
Sbjct:   64 GESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATV-ALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLREGYIIQTRQ-RLDRFHDDH 206          
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_PICTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Picrophilus torridus GN=flpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 2
Query:   23 VRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFE 451
            + +LYLGA++GTTVSH+SDI   +G +YAVE S+ S   L ++++ R N+ PI+EDA    +Y+  V   D I+ D+AQ +Q +I   NA  F       +I IKA  I S  P + + +  +  +++   K  E + L P++
Sbjct:   65 LNILYLGASTGTTVSHLSDIC-ISGRLYAVELSYDSFVKLYSLSQARNNIFPILEDANLVERYKFFVEKCDFIYQDIAQRNQVQIFNQNADIFKPRSAILIIKIKA--ISSKEPEKKILKETISSIRKYNIK--EIIDLRPYD 202          
The following BLAST results are available for this feature:
BLAST of CX300136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_HALS32.995e-2042.57Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALWD5.648e-1940.54Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PICTO4.782e-1836.36Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionC07006F04SK SaltLeaf1 Citrus clementina cDNA clone C07006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300136 ID=CX300136; Name=CX300136; organism=Citrus clementina; type=EST; length=462bp
TAATATTTGGATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTT
CCGGCACAACTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTA
GTTTATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATAT
GGCAAAGAAGAGAACCAATGTTATACCCATAATTGAAGATGCTAGACATC
CTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGAC
GTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTT
TCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAG
ATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTG
CAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGAGCCCTTTGA
GCGAGACCACGC
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