CX300136
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20 Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 2 Query: 20 GVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460 G VLYLGAA+GTTVSHV+D GP YAVEF+ R DL+ +A R + P+++DAR P Y +V VD I DVA QA + AL+ FL G V ++KA D T AVF+ + +L +D ++ +EPF DH Sbjct: 60 GDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDH 202
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19 Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 2 Query: 20 GVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDH 460 G +LYLGAASGTTVSHV+D GP YA+EF+ R RDL+ +A R N+IP++ DAR P Y +V ++ + DVA QA + AL FL G ++ IKA D E VF + + L++ Q L+ F DH Sbjct: 64 GESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATV-ALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLREGYIIQTRQ-RLDRFHDDH 206
BLAST of CX300136 vs. ExPASy Swiss-Prot
Match: FLPA_PICTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Picrophilus torridus GN=flpA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18 Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 2 Query: 23 VRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFE 451 + +LYLGA++GTTVSH+SDI +G +YAVE S+ S L ++++ R N+ PI+EDA +Y+ V D I+ D+AQ +Q +I NA F +I IKA I S P + + + + +++ K E + L P++ Sbjct: 65 LNILYLGASTGTTVSHLSDIC-ISGRLYAVELSYDSFVKLYSLSQARNNIFPILEDANLVERYKFFVEKCDFIYQDIAQRNQVQIFNQNADIFKPRSAILIIKIKA--ISSKEPEKKILKETISSIRKYNIK--EIIDLRPYD 202 The following BLAST results are available for this feature:
BLAST of CX300136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300136 ID=CX300136; Name=CX300136; organism=Citrus clementina; type=EST; length=462bpback to top |