CX300141

Overview
NameCX300141
Unique NameCX300141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300141_ssr359 microsatellite CX300141_ssr359:359..370. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:327..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   15 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 ILVTAPVTNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP+  A ++CG VT  LAPCIP+L TGG  P   CC+GV+ L  AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   16 MVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   15 MVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            + + A V  AI+CG V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   15 VCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    3 ILVTAPVTNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            I+V AP   A ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:   17 IVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.372e-24
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   33 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +TCGQV  +LA CI FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    3 ILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    3 ILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   30 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of CX300141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT2B_ORYSJ1.241e-2555.34Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.241e-2555.34Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP3_LENCU1.620e-2554.37Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_SOLCI1.620e-2555.88Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP3_ARATH2.116e-2550.00Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP_SPIOL1.050e-2455.88Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_PHAAU1.372e-2456.04Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_ORYSJ1.791e-2454.90Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.791e-2454.90Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT41_HORVU1.791e-2454.84Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionC07006F09SK SaltLeaf1 Citrus clementina cDNA clone C07006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300141 ID=CX300141; Name=CX300141; organism=Citrus clementina; type=EST; length=546bp
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATTATCTTAAAAAAAAAAAAAAAAA
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