CX300141

Overview
NameCX300141
Unique NameCX300141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300141_ssr359 microsatellite CX300141_ssr359:359..370. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:327..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3
Query:   30 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    6 LVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +V    + A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   21 VVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    6 LVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +V    + A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   21 VVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            I + +P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   16 IYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 3
Query:    3 ILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L  AP    A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:   16 MLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   30 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   30 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 3
Query:    3 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            +LVTAP+ +  AI+CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   15 MLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 3
Query:    3 ILVTAPVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V  P+T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   15 MIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CX300141 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   33 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
The following BLAST results are available for this feature:
BLAST of CX300141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_AMAHP2.050e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_ORYSJ7.789e-2042.00Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI7.789e-2042.00Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH1.329e-1945.54Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HORVU3.865e-1944.12Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP1_HELAN5.048e-1943.48Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_ARATH4.274e-1847.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH5.582e-1850.47Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP2_ARATH7.290e-1848.57Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTPA_RICCO2.770e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionC07006F09SK SaltLeaf1 Citrus clementina cDNA clone C07006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300141 ID=CX300141; Name=CX300141; organism=Citrus clementina; type=EST; length=546bp
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATTATCTTAAAAAAAAAAAAAAAAA
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