CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNSC (10 kDa chaperonin OS=Synechococcus sp. (strain CC9605) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROMP (10 kDa chaperonin OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 46/96 (47.92%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAIVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM4 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9211) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.910e-21
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.910e-21
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.910e-21
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ I+  EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + + L A +V+AV+
Sbjct:    5 IKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 341
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_SYNSC5.223e-2147.9610 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMP5.223e-2147.9210 kDa chaperonin OS=Prochlorococcus marinus subsp... [more]
CH10_SYNS96.822e-2147.9610 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMT6.822e-2148.9810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM16.822e-2148.9810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM48.910e-2148.9810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM28.910e-2147.4210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM08.910e-2147.4210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_CLAM31.164e-2050.5410 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH10_SYNS31.520e-2047.4210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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